Result of FASTA (omim) for
pF1KB3115
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3115, 423 aa
1>>>pF1KB3115 423 - 423 aa - 423 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9228+/-0.000455; mu= 20.2431+/- 0.028
mean_var=68.4159+/-14.219, 0's: 0 Z-trim(108.6): 44 B-trim: 195 in 1/53
Lambda= 0.155059
statistics sampled from 16624 (16651) to 16624 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.546), E-opt: 0.2 (0.195), width: 16
Scan time: 8.270
The best scores are: opt bits E(85289)
NP_003644 (OMIM: 604665) COP9 signalosome complex ( 423) 2771 629.3 5.5e-180
NP_001186054 (OMIM: 604665) COP9 signalosome compl ( 403) 2650 602.2 7.4e-172
XP_005256894 (OMIM: 604665) PREDICTED: COP9 signal ( 403) 2650 602.2 7.4e-172
NP_001303285 (OMIM: 604665) COP9 signalosome compl ( 356) 2360 537.3 2.3e-152
NP_001303287 (OMIM: 604665) COP9 signalosome compl ( 318) 2031 463.7 3e-130
NP_001303286 (OMIM: 604665) COP9 signalosome compl ( 318) 2031 463.7 3e-130
XP_016880735 (OMIM: 604665) PREDICTED: COP9 signal ( 318) 2031 463.7 3e-130
XP_005256897 (OMIM: 604665) PREDICTED: COP9 signal ( 293) 1940 443.3 3.8e-124
XP_005256899 (OMIM: 604665) PREDICTED: COP9 signal ( 293) 1940 443.3 3.8e-124
NP_001303283 (OMIM: 604665) COP9 signalosome compl ( 293) 1940 443.3 3.8e-124
NP_001303284 (OMIM: 604665) COP9 signalosome compl ( 365) 1679 385.0 1.7e-106
>>NP_003644 (OMIM: 604665) COP9 signalosome complex subu (423 aa)
initn: 2771 init1: 2771 opt: 2771 Z-score: 3352.4 bits: 629.3 E(85289): 5.5e-180
Smith-Waterman score: 2771; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)
10 20 30 40 50 60
pF1KB3 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 VLFVKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VLFVKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 IGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPS
370 380 390 400 410 420
pF1KB3 SYS
:::
NP_003 SYS
>>NP_001186054 (OMIM: 604665) COP9 signalosome complex s (403 aa)
initn: 2650 init1: 2650 opt: 2650 Z-score: 3206.4 bits: 602.2 E(85289): 7.4e-172
Smith-Waterman score: 2650; 100.0% identity (100.0% similar) in 403 aa overlap (21-423:1-403)
10 20 30 40 50 60
pF1KB3 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA
::::::::::::::::::::::::::::::::::::::::
NP_001 MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA
10 20 30 40
70 80 90 100 110 120
pF1KB3 VLFVKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLFVKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB3 IGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKH
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB3 FLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB3 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB3 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB3 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPS
350 360 370 380 390 400
pF1KB3 SYS
:::
NP_001 SYS
>>XP_005256894 (OMIM: 604665) PREDICTED: COP9 signalosom (403 aa)
initn: 2650 init1: 2650 opt: 2650 Z-score: 3206.4 bits: 602.2 E(85289): 7.4e-172
Smith-Waterman score: 2650; 100.0% identity (100.0% similar) in 403 aa overlap (21-423:1-403)
10 20 30 40 50 60
pF1KB3 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA
::::::::::::::::::::::::::::::::::::::::
XP_005 MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA
10 20 30 40
70 80 90 100 110 120
pF1KB3 VLFVKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VLFVKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB3 IGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKH
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB3 FLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB3 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB3 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB3 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPS
350 360 370 380 390 400
pF1KB3 SYS
:::
XP_005 SYS
>>NP_001303285 (OMIM: 604665) COP9 signalosome complex s (356 aa)
initn: 2360 init1: 2360 opt: 2360 Z-score: 2856.5 bits: 537.3 E(85289): 2.3e-152
Smith-Waterman score: 2360; 100.0% identity (100.0% similar) in 356 aa overlap (68-423:1-356)
40 50 60 70 80 90
pF1KB3 NLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPSVPDFETLFSQVQLFISTCNGEHIRYAT
::::::::::::::::::::::::::::::
NP_001 MPSVPDFETLFSQVQLFISTCNGEHIRYAT
10 20 30
100 110 120 130 140 150
pF1KB3 DTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKP
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB3 ALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVS
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB3 HIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRN
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB3 LVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKY
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB3 VLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEI
280 290 300 310 320 330
400 410 420
pF1KB3 TVNPQFVQKSMGSQEDDSGNKPSSYS
::::::::::::::::::::::::::
NP_001 TVNPQFVQKSMGSQEDDSGNKPSSYS
340 350
>>NP_001303287 (OMIM: 604665) COP9 signalosome complex s (318 aa)
initn: 2031 init1: 2031 opt: 2031 Z-score: 2459.4 bits: 463.7 E(85289): 3e-130
Smith-Waterman score: 2031; 98.4% identity (99.4% similar) in 312 aa overlap (112-423:7-318)
90 100 110 120 130 140
pF1KB3 QLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSI
... :::::::::::::::::::::::::
NP_001 MGSTFDMQQTLPLRGIGILKQAIDKMQMNTNQLTSI
10 20 30
150 160 170 180 190 200
pF1KB3 HADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERA
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB3 LYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYH
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB3 ELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQD
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB3 MASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEML
220 230 240 250 260 270
390 400 410 420
pF1KB3 KCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS
::::::::::::::::::::::::::::::::::::::::::
NP_001 KCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS
280 290 300 310
>>NP_001303286 (OMIM: 604665) COP9 signalosome complex s (318 aa)
initn: 2031 init1: 2031 opt: 2031 Z-score: 2459.4 bits: 463.7 E(85289): 3e-130
Smith-Waterman score: 2031; 98.4% identity (99.4% similar) in 312 aa overlap (112-423:7-318)
90 100 110 120 130 140
pF1KB3 QLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSI
... :::::::::::::::::::::::::
NP_001 MGSTFDMQQTLPLRGIGILKQAIDKMQMNTNQLTSI
10 20 30
150 160 170 180 190 200
pF1KB3 HADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERA
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB3 LYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYH
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB3 ELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQD
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB3 MASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEML
220 230 240 250 260 270
390 400 410 420
pF1KB3 KCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS
::::::::::::::::::::::::::::::::::::::::::
NP_001 KCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS
280 290 300 310
>>XP_016880735 (OMIM: 604665) PREDICTED: COP9 signalosom (318 aa)
initn: 2031 init1: 2031 opt: 2031 Z-score: 2459.4 bits: 463.7 E(85289): 3e-130
Smith-Waterman score: 2031; 98.4% identity (99.4% similar) in 312 aa overlap (112-423:7-318)
90 100 110 120 130 140
pF1KB3 QLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSI
... :::::::::::::::::::::::::
XP_016 MGSTFDMQQTLPLRGIGILKQAIDKMQMNTNQLTSI
10 20 30
150 160 170 180 190 200
pF1KB3 HADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERA
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB3 LYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYH
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB3 ELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQD
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB3 MASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEML
220 230 240 250 260 270
390 400 410 420
pF1KB3 KCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS
::::::::::::::::::::::::::::::::::::::::::
XP_016 KCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS
280 290 300 310
>>XP_005256897 (OMIM: 604665) PREDICTED: COP9 signalosom (293 aa)
initn: 1940 init1: 1940 opt: 1940 Z-score: 2349.9 bits: 443.3 E(85289): 3.8e-124
Smith-Waterman score: 1940; 100.0% identity (100.0% similar) in 293 aa overlap (131-423:1-293)
110 120 130 140 150 160
pF1KB3 AGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALP
::::::::::::::::::::::::::::::
XP_005 MQMNTNQLTSIHADLCQLCLLAKCFKPALP
10 20 30
170 180 190 200 210 220
pF1KB3 YLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIM
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB3 LESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVN
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB3 KHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLH
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB3 MIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVN
220 230 240 250 260 270
410 420
pF1KB3 PQFVQKSMGSQEDDSGNKPSSYS
:::::::::::::::::::::::
XP_005 PQFVQKSMGSQEDDSGNKPSSYS
280 290
>>XP_005256899 (OMIM: 604665) PREDICTED: COP9 signalosom (293 aa)
initn: 1940 init1: 1940 opt: 1940 Z-score: 2349.9 bits: 443.3 E(85289): 3.8e-124
Smith-Waterman score: 1940; 100.0% identity (100.0% similar) in 293 aa overlap (131-423:1-293)
110 120 130 140 150 160
pF1KB3 AGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALP
::::::::::::::::::::::::::::::
XP_005 MQMNTNQLTSIHADLCQLCLLAKCFKPALP
10 20 30
170 180 190 200 210 220
pF1KB3 YLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIM
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB3 LESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVN
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB3 KHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLH
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB3 MIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVN
220 230 240 250 260 270
410 420
pF1KB3 PQFVQKSMGSQEDDSGNKPSSYS
:::::::::::::::::::::::
XP_005 PQFVQKSMGSQEDDSGNKPSSYS
280 290
>>NP_001303283 (OMIM: 604665) COP9 signalosome complex s (293 aa)
initn: 1940 init1: 1940 opt: 1940 Z-score: 2349.9 bits: 443.3 E(85289): 3.8e-124
Smith-Waterman score: 1940; 100.0% identity (100.0% similar) in 293 aa overlap (131-423:1-293)
110 120 130 140 150 160
pF1KB3 AGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALP
::::::::::::::::::::::::::::::
NP_001 MQMNTNQLTSIHADLCQLCLLAKCFKPALP
10 20 30
170 180 190 200 210 220
pF1KB3 YLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIM
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB3 LESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVN
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB3 KHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLH
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB3 MIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVN
220 230 240 250 260 270
410 420
pF1KB3 PQFVQKSMGSQEDDSGNKPSSYS
:::::::::::::::::::::::
NP_001 PQFVQKSMGSQEDDSGNKPSSYS
280 290
423 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:51:09 2016 done: Sat Nov 5 04:51:10 2016
Total Scan time: 8.270 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]