FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3115, 423 aa
  1>>>pF1KB3115 423 - 423 aa - 423 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9555+/-0.00116; mu= 13.9289+/- 0.070
 mean_var=69.1582+/-13.682, 0's: 0 Z-trim(101.6): 33  B-trim: 0 in 0/50
 Lambda= 0.154224
 statistics sampled from 6575 (6590) to 6575 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.558), E-opt: 0.2 (0.202), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS11183.1 COPS3 gene_id:8533|Hs108|chr17         ( 423) 2771 626.0 2.1e-179
CCDS56022.1 COPS3 gene_id:8533|Hs108|chr17         ( 403) 2650 599.1 2.5e-171


>>CCDS11183.1 COPS3 gene_id:8533|Hs108|chr17              (423 aa)
 initn: 2771 init1: 2771 opt: 2771  Z-score: 3334.5  bits: 626.0 E(32554): 2.1e-179
Smith-Waterman score: 2771; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)

               10        20        30        40        50        60
pF1KB3 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 VLFVKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VLFVKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 FLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPS
              370       380       390       400       410       420

          
pF1KB3 SYS
       :::
CCDS11 SYS
          

>>CCDS56022.1 COPS3 gene_id:8533|Hs108|chr17              (403 aa)
 initn: 2650 init1: 2650 opt: 2650  Z-score: 3189.3  bits: 599.1 E(32554): 2.5e-171
Smith-Waterman score: 2650; 100.0% identity (100.0% similar) in 403 aa overlap (21-423:1-403)

               10        20        30        40        50        60
pF1KB3 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA
                           ::::::::::::::::::::::::::::::::::::::::
CCDS56                     MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA
                                   10        20        30        40

               70        80        90       100       110       120
pF1KB3 VLFVKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VLFVKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRG
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KB3 IGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 IGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKH
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KB3 FLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ
              170       180       190       200       210       220

              250       260       270       280       290       300
pF1KB3 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS
              230       240       250       260       270       280

              310       320       330       340       350       360
pF1KB3 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF
              290       300       310       320       330       340

              370       380       390       400       410       420
pF1KB3 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPS
              350       360       370       380       390       400

          
pF1KB3 SYS
       :::
CCDS56 SYS
          




423 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:51:08 2016 done: Sat Nov  5 04:51:09 2016
 Total Scan time:  2.760 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]