Result of FASTA (omim) for
pF1KB3113
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3113, 323 aa
1>>>pF1KB3113 323 - 323 aa - 323 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6021+/-0.00048; mu= 8.7667+/- 0.029
mean_var=162.6033+/-35.378, 0's: 0 Z-trim(114.0): 415 B-trim: 892 in 1/49
Lambda= 0.100580
statistics sampled from 22948 (23545) to 22948 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.276), width: 16
Scan time: 6.260
The best scores are: opt bits E(85289)
NP_000279 (OMIM: 215100,266500,601757,614879) pero ( 323) 2274 342.5 6.9e-94
XP_005267076 (OMIM: 215100,266500,601757,614879) P ( 285) 1970 298.4 1.2e-80
XP_016866423 (OMIM: 215100,266500,601757,614879) P ( 199) 1239 192.1 8.1e-49
XP_006715565 (OMIM: 215100,266500,601757,614879) P ( 225) 794 127.6 2.4e-29
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 312 58.0 4.5e-08
XP_011519465 (OMIM: 604447) PREDICTED: guanine nuc ( 301) 298 55.8 1.4e-07
XP_011519464 (OMIM: 604447) PREDICTED: guanine nuc ( 353) 298 55.8 1.5e-07
NP_006569 (OMIM: 604447) guanine nucleotide-bindin ( 353) 298 55.8 1.5e-07
NP_057278 (OMIM: 604447) guanine nucleotide-bindin ( 395) 298 55.9 1.6e-07
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 293 55.0 2.1e-07
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 293 55.0 2.1e-07
NP_113673 (OMIM: 610597) glutamate-rich WD repeat- ( 446) 295 55.5 2.4e-07
NP_001231855 (OMIM: 607795,615922) U4/U6 small nuc ( 521) 293 55.3 3.2e-07
NP_004688 (OMIM: 607795,615922) U4/U6 small nuclea ( 522) 293 55.3 3.2e-07
XP_016863186 (OMIM: 609005) PREDICTED: WD repeat-c ( 982) 296 56.0 3.6e-07
XP_005262782 (OMIM: 609005) PREDICTED: WD repeat-c (1216) 296 56.1 4.2e-07
NP_851782 (OMIM: 609005) WD repeat-containing prot (1283) 296 56.2 4.4e-07
XP_011529884 (OMIM: 609005) PREDICTED: WD repeat-c (1290) 296 56.2 4.4e-07
XP_016863178 (OMIM: 609005) PREDICTED: WD repeat-c (1307) 296 56.2 4.4e-07
XP_016863179 (OMIM: 609005) PREDICTED: WD repeat-c (1307) 296 56.2 4.4e-07
XP_016863177 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 296 56.2 4.4e-07
XP_016863175 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 296 56.2 4.4e-07
XP_016863176 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 296 56.2 4.4e-07
NP_733828 (OMIM: 609005) WD repeat-containing prot (1322) 296 56.2 4.4e-07
XP_016877356 (OMIM: 604447) PREDICTED: guanine nuc ( 212) 281 53.1 6e-07
XP_011531867 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 279 52.9 8e-07
XP_011531865 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 279 52.9 8e-07
XP_011531866 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 279 52.9 8e-07
XP_011510137 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 280 53.2 8.7e-07
XP_016860389 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 280 53.2 8.7e-07
XP_016860390 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 280 53.2 8.7e-07
XP_016860391 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 280 53.2 8.7e-07
XP_011531864 (OMIM: 614783,614813) PREDICTED: POC1 ( 300) 279 53.0 9.2e-07
XP_011531863 (OMIM: 614783,614813) PREDICTED: POC1 ( 326) 279 53.0 9.7e-07
XP_016860387 (OMIM: 612173) PREDICTED: sperm-assoc ( 390) 280 53.3 9.9e-07
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359) 279 53.1 1e-06
XP_011531862 (OMIM: 614783,614813) PREDICTED: POC1 ( 374) 279 53.1 1.1e-06
NP_056241 (OMIM: 614783,614813) POC1 centriolar pr ( 407) 279 53.1 1.1e-06
XP_016860385 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 280 53.4 1.2e-06
XP_016860386 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 280 53.4 1.2e-06
XP_011510125 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 280 53.4 1.2e-06
XP_011510124 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 280 53.4 1.2e-06
XP_011510123 (OMIM: 612173) PREDICTED: sperm-assoc ( 537) 280 53.4 1.2e-06
XP_011510121 (OMIM: 612173) PREDICTED: sperm-assoc ( 577) 280 53.5 1.3e-06
XP_011510116 (OMIM: 612173) PREDICTED: sperm-assoc ( 600) 280 53.5 1.3e-06
NP_078808 (OMIM: 612173) sperm-associated antigen ( 631) 280 53.5 1.4e-06
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655) 279 53.4 1.5e-06
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655) 279 53.4 1.5e-06
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655) 279 53.4 1.5e-06
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658) 279 53.4 1.5e-06
>>NP_000279 (OMIM: 215100,266500,601757,614879) peroxiso (323 aa)
initn: 2274 init1: 2274 opt: 2274 Z-score: 1806.6 bits: 342.5 E(85289): 6.9e-94
Smith-Waterman score: 2274; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)
10 20 30 40 50 60
pF1KB3 MSAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILDPDEAGLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILDPDEAGLRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 FRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 QTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 RIWDVKAAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RIWDVKAAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 HTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPT
250 260 270 280 290 300
310 320
pF1KB3 QVADCSWDETIKIYDPACLTIPA
:::::::::::::::::::::::
NP_000 QVADCSWDETIKIYDPACLTIPA
310 320
>>XP_005267076 (OMIM: 215100,266500,601757,614879) PREDI (285 aa)
initn: 1970 init1: 1970 opt: 1970 Z-score: 1568.8 bits: 298.4 E(85289): 1.2e-80
Smith-Waterman score: 1970; 99.6% identity (100.0% similar) in 281 aa overlap (43-323:5-285)
20 30 40 50 60 70
pF1KB3 RTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILDPDEAGLRLFRSFDWNDGLFD
:.::::::::::::::::::::::::::::
XP_005 MHTFASCGTLLILDPDEAGLRLFRSFDWNDGLFD
10 20 30
80 90 100 110 120 130
pF1KB3 VTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWSQTRGEQLVVSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWSQTRGEQLVVSGS
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB3 WDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTLRIWDVKAAGVRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTLRIWDVKAAGVRI
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB3 VIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSP
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB3 FHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPTQVADCSWDETIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPTQVADCSWDETIK
220 230 240 250 260 270
320
pF1KB3 IYDPACLTIPA
:::::::::::
XP_005 IYDPACLTIPA
280
>>XP_016866423 (OMIM: 215100,266500,601757,614879) PREDI (199 aa)
initn: 1239 init1: 1239 opt: 1239 Z-score: 997.4 bits: 192.1 E(85289): 8.1e-49
Smith-Waterman score: 1239; 97.2% identity (98.9% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KB3 MSAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILDPDEAGLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILDPDEAGLRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 FRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 QTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::: . :.
XP_016 QTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASDSGTF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 RIWDVKAAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLG
.
XP_016 QSLTLFLKQWSIIQSLLVV
190
>>XP_006715565 (OMIM: 215100,266500,601757,614879) PREDI (225 aa)
initn: 886 init1: 794 opt: 794 Z-score: 647.8 bits: 127.6 E(85289): 2.4e-29
Smith-Waterman score: 1369; 69.7% identity (69.7% similar) in 323 aa overlap (1-323:1-225)
10 20 30 40 50 60
pF1KB3 MSAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILDPDEAGLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILDPDEAGLRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 FRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQE-------
70 80 90 100 110
130 140 150 160 170 180
pF1KB3 QTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTL
XP_006 ------------------------------------------------------------
190 200 210 220 230 240
pF1KB3 RIWDVKAAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLG
:::::::::::::::::::::::::::::
XP_006 -------------------------------NLLVTGAVDCSLRGWDLRNVRQPVFELLG
120 130 140
250 260 270 280 290 300
pF1KB3 HTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPT
150 160 170 180 190 200
310 320
pF1KB3 QVADCSWDETIKIYDPACLTIPA
:::::::::::::::::::::::
XP_006 QVADCSWDETIKIYDPACLTIPA
210 220
>>NP_758440 (OMIM: 614784,615973) POC1 centriolar protei (478 aa)
initn: 167 init1: 85 opt: 312 Z-score: 265.9 bits: 58.0 E(85289): 4.5e-08
Smith-Waterman score: 312; 30.1% identity (61.2% similar) in 209 aa overlap (107-315:14-214)
80 90 100 110 120 130
pF1KB3 ENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWSQTRGEQLVVSGSWDQT
.: : . :.: : . :.::. ..:::
NP_758 MASATEDPVLERYFKGHKAAITSLDLSPN-GKQLA-TASWDTF
10 20 30 40
140 150 160 170 180 190
pF1KB3 VKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTLRIWDVKAAGVRIVIPA
. ::. . ::.... :. .::: . .:::: :.:.:.: : . :
NP_758 LMLWNFKPHARAYRYVGHKDVVTSVQFSPH-GNLLASASRDRTVRLWIPDKRGKFSEFKA
50 60 70 80 90 100
200 210 220 230 240 250
pF1KB3 HQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHAS
: : . : :. . ..:.:.. : :.. :.. : .. : ::. .: .:::: .
NP_758 HTAPVRSVDFSA-DGQFLATASEDKSIKVWSMYRQRF-LYSLYRHTHWVRCAKFSP-DGR
110 120 130 140 150
260 270 280 290 300 310
pF1KB3 VLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPTQVADCSWDETIKIYDP
...::: : :...:. .. . . .. . :. .::. : : .:. . :.:.:..:
NP_758 LIVSCSEDKTIKIWDTTNKQCV-NNFSDSVGFANFVDFN-PSGTCIASAGSDQTVKVWDV
160 170 180 190 200 210
320
pF1KB3 ACLTIPA
NP_758 RVNKLLQHYQVHSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFT
220 230 240 250 260 270
>>XP_011519465 (OMIM: 604447) PREDICTED: guanine nucleot (301 aa)
initn: 165 init1: 109 opt: 298 Z-score: 257.3 bits: 55.8 E(85289): 1.4e-07
Smith-Waterman score: 298; 27.6% identity (56.4% similar) in 250 aa overlap (32-270:57-300)
10 20 30 40 50
pF1KB3 SAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTL--------LILDP
.::: : .:: : : .:
XP_011 VSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK
30 40 50 60 70 80
60 70 80 90 100 110
pF1KB3 DEAGLRLFRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQE
.: .: . . ... :.. ..: ::::. :::. ... :: .. :. .
XP_011 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV-ESGQLLQSFHGHGAD
90 100 110 120 130 140
120 130 140 150 160 170
pF1KB3 VYSVDWSQTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFAS
: .: . .. . :::. :. . .:: :. . .:. ::: : :. . : :::
XP_011 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPS-GDAFAS
150 160 170 180 190 200
180 190 200 210 220 230
pF1KB3 ASGDQTLRIWDVKAAGVRIVIPAHQAEILSCDWCKYNEN--LLVTGAVDCSLRGWD-LRN
.: : : :..:..: ...: .... :.. . .. . :: .: : .. :: :..
XP_011 GSDDATCRLYDLRA-DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG
210 220 230 240 250 260
240 250 260 270 280 290
pF1KB3 VRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTC
: . :.:: . .. :: .... : :.: :.: :
XP_011 SRVSI--LFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA
270 280 290 300
300 310 320
pF1KB3 GLDFSLQSPTQVADCSWDETIKIYDPACLTIPA
>>XP_011519464 (OMIM: 604447) PREDICTED: guanine nucleot (353 aa)
initn: 165 init1: 109 opt: 298 Z-score: 256.5 bits: 55.8 E(85289): 1.5e-07
Smith-Waterman score: 298; 27.6% identity (56.4% similar) in 250 aa overlap (32-270:109-352)
10 20 30 40 50
pF1KB3 SAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTL--------LILDP
.::: : .:: : : .:
XP_011 VSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK
80 90 100 110 120 130
60 70 80 90 100 110
pF1KB3 DEAGLRLFRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQE
.: .: . . ... :.. ..: ::::. :::. ... :: .. :. .
XP_011 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV-ESGQLLQSFHGHGAD
140 150 160 170 180 190
120 130 140 150 160 170
pF1KB3 VYSVDWSQTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFAS
: .: . .. . :::. :. . .:: :. . .:. ::: : :. . : :::
XP_011 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPS-GDAFAS
200 210 220 230 240 250
180 190 200 210 220 230
pF1KB3 ASGDQTLRIWDVKAAGVRIVIPAHQAEILSCDWCKYNEN--LLVTGAVDCSLRGWD-LRN
.: : : :..:..: ...: .... :.. . .. . :: .: : .. :: :..
XP_011 GSDDATCRLYDLRA-DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG
260 270 280 290 300 310
240 250 260 270 280 290
pF1KB3 VRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTC
: . :.:: . .. :: .... : :.: :.: :
XP_011 SRVSI--LFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA
320 330 340 350
300 310 320
pF1KB3 GLDFSLQSPTQVADCSWDETIKIYDPACLTIPA
>>NP_006569 (OMIM: 604447) guanine nucleotide-binding pr (353 aa)
initn: 165 init1: 109 opt: 298 Z-score: 256.5 bits: 55.8 E(85289): 1.5e-07
Smith-Waterman score: 298; 27.6% identity (56.4% similar) in 250 aa overlap (32-270:109-352)
10 20 30 40 50
pF1KB3 SAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTL--------LILDP
.::: : .:: : : .:
NP_006 VSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK
80 90 100 110 120 130
60 70 80 90 100 110
pF1KB3 DEAGLRLFRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQE
.: .: . . ... :.. ..: ::::. :::. ... :: .. :. .
NP_006 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV-ESGQLLQSFHGHGAD
140 150 160 170 180 190
120 130 140 150 160 170
pF1KB3 VYSVDWSQTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFAS
: .: . .. . :::. :. . .:: :. . .:. ::: : :. . : :::
NP_006 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPS-GDAFAS
200 210 220 230 240 250
180 190 200 210 220 230
pF1KB3 ASGDQTLRIWDVKAAGVRIVIPAHQAEILSCDWCKYNEN--LLVTGAVDCSLRGWD-LRN
.: : : :..:..: ...: .... :.. . .. . :: .: : .. :: :..
NP_006 GSDDATCRLYDLRA-DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG
260 270 280 290 300 310
240 250 260 270 280 290
pF1KB3 VRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTC
: . :.:: . .. :: .... : :.: :.: :
NP_006 SRVSI--LFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA
320 330 340 350
300 310 320
pF1KB3 GLDFSLQSPTQVADCSWDETIKIYDPACLTIPA
>>NP_057278 (OMIM: 604447) guanine nucleotide-binding pr (395 aa)
initn: 165 init1: 109 opt: 298 Z-score: 255.9 bits: 55.9 E(85289): 1.6e-07
Smith-Waterman score: 298; 27.6% identity (56.4% similar) in 250 aa overlap (32-270:151-394)
10 20 30 40 50
pF1KB3 SAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTL--------LILDP
.::: : .:: : : .:
NP_057 VSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK
130 140 150 160 170 180
60 70 80 90 100 110
pF1KB3 DEAGLRLFRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQE
.: .: . . ... :.. ..: ::::. :::. ... :: .. :. .
NP_057 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV-ESGQLLQSFHGHGAD
190 200 210 220 230
120 130 140 150 160 170
pF1KB3 VYSVDWSQTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFAS
: .: . .. . :::. :. . .:: :. . .:. ::: : :. . : :::
NP_057 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPS-GDAFAS
240 250 260 270 280 290
180 190 200 210 220 230
pF1KB3 ASGDQTLRIWDVKAAGVRIVIPAHQAEILSCDWCKYNEN--LLVTGAVDCSLRGWD-LRN
.: : : :..:..: ...: .... :.. . .. . :: .: : .. :: :..
NP_057 GSDDATCRLYDLRA-DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG
300 310 320 330 340 350
240 250 260 270 280 290
pF1KB3 VRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTC
: . :.:: . .. :: .... : :.: :.: :
NP_057 SRVSI--LFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA
360 370 380 390
300 310 320
pF1KB3 GLDFSLQSPTQVADCSWDETIKIYDPACLTIPA
>>NP_001309196 (OMIM: 607795,615922) U4/U6 small nuclear (279 aa)
initn: 230 init1: 126 opt: 293 Z-score: 253.8 bits: 55.0 E(85289): 2.1e-07
Smith-Waterman score: 336; 29.3% identity (58.9% similar) in 270 aa overlap (53-314:18-276)
30 40 50 60 70
pF1KB3 EFSPYLPGRLACATAQHYGIAGCGTLLILDPDEAGLRLFRSFDWNDG--LFD--VTWSEN
:: :. .:. . : : .: : : .
NP_001 MLSFVFDRSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLD
10 20 30 40
80 90 100 110 120 130
pF1KB3 NEHV-LITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWSQTRGEQLVVSGSWDQTV
. : : .:..:::..:: . . :. . :. .: : : . : ... . .:..
NP_001 PKDVNLASCAADGSVKLW-SLDSDEPVADIEGHTVRVARVMWHPS-G-RFLGTTCYDRSW
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB3 KLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASG-DQTLRIWDVKAAGVRIVIPA
.::: . . . .:: .:. . : : .:...: : :.::.... . . .
NP_001 RLWDLEAQEEILHQEGHSMGVYDIAF--HQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEG
110 120 130 140 150 160
200 210 220 230 240 250
pF1KB3 HQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHAS
: :: . .. : ..::. : . . ::::. :. :. . .: . ::: :.:..
NP_001 HLKEIYGINFSP-NGYHIATGSGDNTCKVWDLRQ-RRCVYTIPAHQNLVTGVKFEPIHGN
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB3 VLASCSYDFTVRFWNFSKPD-SLLETVEHHTEFTCGLDFSLQSPTQ-VADCSWDETIKIY
: . .:: :...: ..: : :.:. : . :::.: : : .: ::.:.:.:..
NP_001 FLLTGAYDNTAKIW--THPGWSPLKTLAGHEGKVMGLDIS--SDGQLIATCSYDRTFKLW
230 240 250 260 270
320
pF1KB3 DPACLTIPA
NP_001 MAE
323 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:50:35 2016 done: Sat Nov 5 04:50:36 2016
Total Scan time: 6.260 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]