Result of FASTA (omim) for
pF1KB3110
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3110, 297 aa
1>>>pF1KB3110 297 - 297 aa - 297 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2726+/-0.00031; mu= 16.4277+/- 0.019
mean_var=78.2624+/-15.623, 0's: 0 Z-trim(117.1): 47 B-trim: 0 in 0/54
Lambda= 0.144977
statistics sampled from 28836 (28883) to 28836 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.339), width: 16
Scan time: 7.880
The best scores are: opt bits E(85289)
NP_001013454 (OMIM: 602496) 3-mercaptopyruvate sul ( 297) 2072 442.5 4.7e-124
XP_005261667 (OMIM: 602496) PREDICTED: 3-mercaptop ( 297) 2072 442.5 4.7e-124
NP_001123989 (OMIM: 602496) 3-mercaptopyruvate sul ( 297) 2072 442.5 4.7e-124
NP_066949 (OMIM: 602496) 3-mercaptopyruvate sulfur ( 317) 2072 442.5 5e-124
XP_011528498 (OMIM: 602496) PREDICTED: 3-mercaptop ( 294) 1384 298.6 9.8e-81
XP_011528497 (OMIM: 602496) PREDICTED: 3-mercaptop ( 237) 1378 297.3 2e-80
NP_001257412 (OMIM: 180370) thiosulfate sulfurtran ( 297) 1278 276.4 4.7e-74
NP_003303 (OMIM: 180370) thiosulfate sulfurtransfe ( 297) 1278 276.4 4.7e-74
>>NP_001013454 (OMIM: 602496) 3-mercaptopyruvate sulfurt (297 aa)
initn: 2072 init1: 2072 opt: 2072 Z-score: 2348.1 bits: 442.5 E(85289): 4.7e-124
Smith-Waterman score: 2072; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KB3 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
250 260 270 280 290
>>XP_005261667 (OMIM: 602496) PREDICTED: 3-mercaptopyruv (297 aa)
initn: 2072 init1: 2072 opt: 2072 Z-score: 2348.1 bits: 442.5 E(85289): 4.7e-124
Smith-Waterman score: 2072; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KB3 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
250 260 270 280 290
>>NP_001123989 (OMIM: 602496) 3-mercaptopyruvate sulfurt (297 aa)
initn: 2072 init1: 2072 opt: 2072 Z-score: 2348.1 bits: 442.5 E(85289): 4.7e-124
Smith-Waterman score: 2072; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KB3 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
250 260 270 280 290
>>NP_066949 (OMIM: 602496) 3-mercaptopyruvate sulfurtran (317 aa)
initn: 2072 init1: 2072 opt: 2072 Z-score: 2347.7 bits: 442.5 E(85289): 5e-124
Smith-Waterman score: 2072; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:21-317)
10 20 30 40
pF1KB3 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPK
::::::::::::::::::::::::::::::::::::::::
NP_066 MAEPGSRESETRARSPSVAAMASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 LGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIY
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 DASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 DASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDP
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQE
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 GLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 GLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWY
250 260 270 280 290 300
290
pF1KB3 MRARPEDVISEGRGKTH
:::::::::::::::::
NP_066 MRARPEDVISEGRGKTH
310
>>XP_011528498 (OMIM: 602496) PREDICTED: 3-mercaptopyruv (294 aa)
initn: 1384 init1: 1384 opt: 1384 Z-score: 1570.4 bits: 298.6 E(85289): 9.8e-81
Smith-Waterman score: 1384; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)
10 20 30 40 50 60
pF1KB3 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
:::::::::::::::::::
XP_011 VDSRATGRFRGTEPEPRDGNAGEGGRRSSGARPLRPEQCPGLDLSFIFLIYLAFISFPFF
190 200 210 220 230 240
>>XP_011528497 (OMIM: 602496) PREDICTED: 3-mercaptopyruv (237 aa)
initn: 1376 init1: 1376 opt: 1378 Z-score: 1564.9 bits: 297.3 E(85289): 2e-80
Smith-Waterman score: 1378; 98.5% identity (99.5% similar) in 202 aa overlap (1-201:21-222)
10 20 30 40
pF1KB3 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPK
::::::::::::::::::::::::::::::::::::::::
XP_011 MAEPGSRESETRARSPSVAAMASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 LGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIY
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 DASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDP
130 140 150 160 170 180
170 180 190 200 210
pF1KB3 AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRD-GIEPGHIPGTVNIPFTDFLSQ
:::::::::::::::::::::::::::::::::::::: :..
XP_011 AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDAGVQWRNLGSPQPPPPGFK
190 200 210 220 230
220 230 240 250 260 270
pF1KB3 EGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEW
>>NP_001257412 (OMIM: 180370) thiosulfate sulfurtransfer (297 aa)
initn: 1180 init1: 691 opt: 1278 Z-score: 1450.6 bits: 276.4 E(85289): 4.7e-74
Smith-Waterman score: 1278; 59.5% identity (83.1% similar) in 296 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KB3 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
:. : :::::..:.::..:. . : :..:::::: : :.::.:. :::.:::.::
NP_001 MVHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPGT-REARKEYLERHVPGASFF
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
::..: : .:::. :::. ::::.::::.. ::::.::. : . :::::::::.:
NP_001 DIEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVYDGEHLGSFYAPRVWWMFRVF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
::..::.:.::.:.::... :..: :.: :: :.: :: ...::::.. :::::.:::.
NP_001 GHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLDRSLLKTYEQVLENLESKRFQL
120 130 140 150 160 170
190 200 210 220 230
pF1KB3 VDSRATGRFRGTEPEPRD-GIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVD
::::. ::: :::::: :.. ::: :.::.:: :::...:.::.:::.: ::: ::::
NP_001 VDSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDFLTEDGFEKGPEELRALFQTKKVD
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
::.::.::: .:::::::::.::::::::: .::::: ::. :: ::. .:.:...
NP_001 LSQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWFRRAPPESRVSQGKSEKA
240 250 260 270 280 290
>>NP_003303 (OMIM: 180370) thiosulfate sulfurtransferase (297 aa)
initn: 1180 init1: 691 opt: 1278 Z-score: 1450.6 bits: 276.4 E(85289): 4.7e-74
Smith-Waterman score: 1278; 59.5% identity (83.1% similar) in 296 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KB3 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
:. : :::::..:.::..:. . : :..:::::: : :.::.:. :::.:::.::
NP_003 MVHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPGT-REARKEYLERHVPGASFF
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
::..: : .:::. :::. ::::.::::.. ::::.::. : . :::::::::.:
NP_003 DIEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVYDGEHLGSFYAPRVWWMFRVF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
::..::.:.::.:.::... :..: :.: :: :.: :: ...::::.. :::::.:::.
NP_003 GHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLDRSLLKTYEQVLENLESKRFQL
120 130 140 150 160 170
190 200 210 220 230
pF1KB3 VDSRATGRFRGTEPEPRD-GIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVD
::::. ::: :::::: :.. ::: :.::.:: :::...:.::.:::.: ::: ::::
NP_003 VDSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDFLTEDGFEKGPEELRALFQTKKVD
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
::.::.::: .:::::::::.::::::::: .::::: ::. :: ::. .:.:...
NP_003 LSQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWFRRAPPESRVSQGKSEKA
240 250 260 270 280 290
297 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:10:21 2016 done: Fri Nov 4 02:10:22 2016
Total Scan time: 7.880 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]