FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3110, 297 aa
  1>>>pF1KB3110 297 - 297 aa - 297 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2077+/-0.0007; mu= 16.9013+/- 0.042
 mean_var=74.4742+/-15.296, 0's: 0 Z-trim(110.5): 23  B-trim: 268 in 1/51
 Lambda= 0.148618
 statistics sampled from 11622 (11640) to 11622 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.358), width:  16
 Scan time:  2.340

The best scores are:                                      opt bits E(32554)
CCDS13939.1 MPST gene_id:4357|Hs108|chr22          ( 297) 2072 453.0 1.2e-127
CCDS46703.1 MPST gene_id:4357|Hs108|chr22          ( 317) 2072 453.0 1.3e-127
CCDS13938.1 TST gene_id:7263|Hs108|chr22           ( 297) 1278 282.8 2.2e-76


>>CCDS13939.1 MPST gene_id:4357|Hs108|chr22               (297 aa)
 initn: 2072 init1: 2072 opt: 2072  Z-score: 2405.0  bits: 453.0 E(32554): 1.2e-127
Smith-Waterman score: 2072; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KB3 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
              190       200       210       220       230       240

              250       260       270       280       290       
pF1KB3 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
              250       260       270       280       290       

>>CCDS46703.1 MPST gene_id:4357|Hs108|chr22               (317 aa)
 initn: 2072 init1: 2072 opt: 2072  Z-score: 2404.7  bits: 453.0 E(32554): 1.3e-127
Smith-Waterman score: 2072; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:21-317)

                                   10        20        30        40
pF1KB3                     MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPK
                           ::::::::::::::::::::::::::::::::::::::::
CCDS46 MAEPGSRESETRARSPSVAAMASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPK
               10        20        30        40        50        60

               50        60        70        80        90       100
pF1KB3 LGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIY
               70        80        90       100       110       120

              110       120       130       140       150       160
pF1KB3 DASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDP
              130       140       150       160       170       180

              170       180       190       200       210       220
pF1KB3 AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQE
              190       200       210       220       230       240

              230       240       250       260       270       280
pF1KB3 GLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWY
              250       260       270       280       290       300

              290       
pF1KB3 MRARPEDVISEGRGKTH
       :::::::::::::::::
CCDS46 MRARPEDVISEGRGKTH
              310       

>>CCDS13938.1 TST gene_id:7263|Hs108|chr22                (297 aa)
 initn: 1180 init1: 691 opt: 1278  Z-score: 1485.0  bits: 282.8 E(32554): 2.2e-76
Smith-Waterman score: 1278; 59.5% identity (83.1% similar) in 296 aa overlap (1-295:1-295)

               10        20        30        40        50        60
pF1KB3 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
       :.   : :::::..:.::..:. . :  :..:::::: :   :.::.:. :::.:::.::
CCDS13 MVHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPGT-REARKEYLERHVPGASFF
               10        20        30        40         50         

               70        80        90       100       110       120
pF1KB3 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
       ::..: : .:::. :::.   ::::.::::..  ::::.::.   : . :::::::::.:
CCDS13 DIEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVYDGEHLGSFYAPRVWWMFRVF
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB3 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
       ::..::.:.::.:.::... :..:  :.: :: :.: :: ...::::.. :::::.:::.
CCDS13 GHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLDRSLLKTYEQVLENLESKRFQL
     120       130       140       150       160       170         

              190        200       210       220       230         
pF1KB3 VDSRATGRFRGTEPEPRD-GIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVD
       ::::. ::: ::::::   :.. ::: :.::.:: :::...:.::.:::.: ::: ::::
CCDS13 VDSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDFLTEDGFEKGPEELRALFQTKKVD
     180       190       200       210       220       230         

     240       250       260       270       280       290       
pF1KB3 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
       ::.::.::: .:::::::::.::::::::: .::::: ::. :: ::. .:.:...  
CCDS13 LSQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWFRRAPPESRVSQGKSEKA
     240       250       260       270       280       290       




297 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:10:20 2016 done: Fri Nov  4 02:10:20 2016
 Total Scan time:  2.340 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]