FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3106, 837 aa
  1>>>pF1KB3106 837 - 837 aa - 837 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6379+/-0.00106; mu= 15.0449+/- 0.064
 mean_var=112.0103+/-21.880, 0's: 0 Z-trim(106.2): 43  B-trim: 0 in 0/51
 Lambda= 0.121184
 statistics sampled from 8831 (8859) to 8831 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.272), width:  16
 Scan time:  2.890

The best scores are:                                      opt bits E(32554)
CCDS13838.1 TFIP11 gene_id:24144|Hs108|chr22       ( 837) 5739 1015.0       0


>>CCDS13838.1 TFIP11 gene_id:24144|Hs108|chr22            (837 aa)
 initn: 5739 init1: 5739 opt: 5739  Z-score: 5426.3  bits: 1015.0 E(32554):    0
Smith-Waterman score: 5739; 100.0% identity (100.0% similar) in 837 aa overlap (1-837:1-837)

               10        20        30        40        50        60
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
              730       740       750       760       770       780

              790       800       810       820       830       
pF1KB3 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
              790       800       810       820       830       




837 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:26:47 2016 done: Thu Nov  3 12:26:48 2016
 Total Scan time:  2.890 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]