Result of FASTA (ccds) for
pF1KB3093
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3093, 745 aa
1>>>pF1KB3093 745 - 745 aa - 745 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5519+/-0.00117; mu= 12.8948+/- 0.069
mean_var=72.3883+/-14.910, 0's: 0 Z-trim(102.1): 49 B-trim: 301 in 1/48
Lambda= 0.150744
statistics sampled from 6785 (6820) to 6785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.209), width: 16
Scan time: 3.760
The best scores are: opt bits E(32554)
CCDS11407.1 JUP gene_id:3728|Hs108|chr17 ( 745) 4830 1060.4 0
CCDS2694.1 CTNNB1 gene_id:1499|Hs108|chr3 ( 781) 3164 698.0 1.4e-200
>>CCDS11407.1 JUP gene_id:3728|Hs108|chr17 (745 aa)
initn: 4830 init1: 4830 opt: 4830 Z-score: 5673.0 bits: 1060.4 E(32554): 0
Smith-Waterman score: 4830; 99.9% identity (100.0% similar) in 745 aa overlap (1-745:1-745)
10 20 30 40 50 60
pF1KB3 MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YTQGVPPSQGDLEYQMSTTARAKRVREAMCPGVSGEDSSLLLATQVEGQATNLQRLAEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YTQGVPPSQGDLEYQMSTTARAKRVREAMCPGVSGEDSSLLLATQVEGQATNLQRLAEPS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 QLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 SVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 ESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAGGMQALGKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAGGMQALGKH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 LTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 NNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPEAEMAQNSVRLNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPEAEMAQNSVRLNY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 GIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 HVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPLFVQLLYSSVENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPLFVQLLYSSVENI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 QRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHSRNEGTATYAAAVLFRISEDKNPDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHSRNEGTATYAAAVLFRISEDKNPDY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 RKRVSVELTNSLFKHDPAAWEAAQSMIPINEPYGDDLDATYRPMYSSDVPLDPLEMHMDM
::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS11 RKRVSVELTNSLFKHDPAAWEAAQSMIPINEPYGDDMDATYRPMYSSDVPLDPLEMHMDM
670 680 690 700 710 720
730 740
pF1KB3 DGDYPIDTYSDGLRPPYPTADHMLA
:::::::::::::::::::::::::
CCDS11 DGDYPIDTYSDGLRPPYPTADHMLA
730 740
>>CCDS2694.1 CTNNB1 gene_id:1499|Hs108|chr3 (781 aa)
initn: 3118 init1: 2428 opt: 3164 Z-score: 3714.5 bits: 698.0 E(32554): 1.4e-200
Smith-Waterman score: 3187; 68.5% identity (85.1% similar) in 752 aa overlap (1-731:8-755)
10 20 30 40 50
pF1KB3 MEVMNLMEQPIK--VTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGR
::. :: : :..::: ::::::::.: .::.:.:: ::...
CCDS26 MATQADLMELDMAMEPDRKAAVSHWQQQSYLDSGIHSGATTTAPSLSGKGNPEEEDVDTS
10 20 30 40 50 60
60 70 80 90 100
pF1KB3 QYTLKKTTTYTQGVPPSQ-GDLEYQMSTTARAKRVREAMCPGVSGEDSSLLLATQVEG-Q
: . ..:. : .:.. :.. : ::.::: :: : . : .. .:: .. .
CCDS26 QVLYEWEQGFSQSFTQEQVADIDGQYAMT-RAQRVRAAMFPETLDEGMQIP-STQFDAAH
70 80 90 100 110
110 120 130 140 150 160
pF1KB3 ATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQL
::.::::::::.:: :.:.::::::::::::::.::::::::::: :::.:::..:.::
CCDS26 PTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQL
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB3 SKKEASRRALMGSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIP
:::::::.:.: :::.:.:.:::::::.:..:::::.. :::::::::::::::::::::
CCDS26 SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB3 ALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITT
:::.::.:::.:::::::::::::::.::::::::::: :::::: ::::.: :::::::
CCDS26 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB3 DCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIV
::::.::::::::::::::.:::::::.:::.:.:::::::::::::::::: :::::::
CCDS26 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB3 EAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQLSVDDVNVLT
::::::::: :::. : :::::::::::::::.::::::.:..: ::. :. ::.::.:
CCDS26 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB3 CATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPEA
::.: :::::::: ::: .: : .:.:::....:::::..::::::.:::::::::: ::
CCDS26 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA
420 430 440 450 460 470
470 480 490 500 510 520
pF1KB3 EMAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQ
:::::.:::.::.:..::::. :..:::.:::.::::::::::::::::.: ..::::::
CCDS26 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ
480 490 500 510 520 530
530 540 550 560 570 580
pF1KB3 LLVKAHQDAQRHVA-AGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPL
:::.::::.::... .:::: ...::::::::::::::::::::: ::. : ::::::
CCDS26 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPL
540 550 560 570 580 590
590 600 610 620 630 640
pF1KB3 FVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHSRNEGTATYAAAV
::::::: .:::::::::::::::::::::.::.::::.::: :::::::::.:::::::
CCDS26 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV
600 610 620 630 640 650
650 660 670 680 690 700
pF1KB3 LFRISEDKNPDYRKRVSVELTNSLFKHDPAAW-EAAQSMIPIN---EPYG--DDLDATYR
:::.:::: ::.::.:::::.:::. .: :: :.:. . :. :: : .: : .::
CCDS26 LFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQD-DPSYR
660 670 680 690 700 710
710 720 730 740
pF1KB3 PMYSSD-----VPLDPLEMHMDMDG-----DYPIDTYSDGLRPPYPTADHMLA
..:. . .::. :. .: : :::.: :
CCDS26 SFHSGGYGQDALGMDPM-MEHEMGGHHPGADYPVDGLPDLGHAQDLMDGLPPGDSNQLAW
720 730 740 750 760 770
CCDS26 FDTDL
780
745 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:21:46 2016 done: Thu Nov 3 12:21:47 2016
Total Scan time: 3.760 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]