Result of FASTA (ccds) for
pF1KB3051
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3051, 1215 aa
1>>>pF1KB3051 1215 - 1215 aa - 1215 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.0787+/-0.00116; mu= -2.7133+/- 0.070
mean_var=317.4757+/-63.669, 0's: 0 Z-trim(112.0): 35 B-trim: 0 in 0/53
Lambda= 0.071981
statistics sampled from 12829 (12848) to 12829 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.395), width: 16
Scan time: 4.510
The best scores are: opt bits E(32554)
CCDS58638.1 AP3D1 gene_id:8943|Hs108|chr19 (1215) 7920 837.2 0
CCDS42459.1 AP3D1 gene_id:8943|Hs108|chr19 (1153) 5626 599.0 2.2e-170
>>CCDS58638.1 AP3D1 gene_id:8943|Hs108|chr19 (1215 aa)
initn: 7920 init1: 7920 opt: 7920 Z-score: 4459.6 bits: 837.2 E(32554): 0
Smith-Waterman score: 7920; 100.0% identity (100.0% similar) in 1215 aa overlap (1-1215:1-1215)
10 20 30 40 50 60
pF1KB3 MALKMVKGSIDRMFDKNLQDLVRGIRNHKEDEAKYISQCIDEIKQELKQDNIAVKANAVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MALKMVKGSIDRMFDKNLQDLVRGIRNHKEDEAKYISQCIDEIKQELKQDNIAVKANAVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KLTYLQMLGYDISWAAFNIIEVMSASKFTFKRIGYLAASQSFHEGTDVIMLTTNQIRKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KLTYLQMLGYDISWAAFNIIEVMSASKFTFKRIGYLAASQSFHEGTDVIMLTTNQIRKDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 SSPSQYDTGVALTGLSCFVTPDLARDLANDIMTLMSHTKPYIRKKAVLIMYKVFLKYPES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SSPSQYDTGVALTGLSCFVTPDLARDLANDIMTLMSHTKPYIRKKAVLIMYKVFLKYPES
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LRPAFPRLKEKLEDPDPGVQSAAVNVICELARRNPKNYLSLAPLFFKLMTSSTNNWVLIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LRPAFPRLKEKLEDPDPGVQSAAVNVICELARRNPKNYLSLAPLFFKLMTSSTNNWVLIK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 IIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMSLLYECVNTVIAVLISLSSGMPNHSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMSLLYECVNTVIAVLISLSSGMPNHSAS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 IQLCVQKLRILIEDSDQNLKYLGLLAMSKILKTHPKSVQSHKDLILQCLDDKDESIRLRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IQLCVQKLRILIEDSDQNLKYLGLLAMSKILKTHPKSVQSHKDLILQCLDDKDESIRLRA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 LDLLYGMVSKKNLMEIVKKLMTHVDKAEGTTYRDELLTKIIDICSQSNYQYITNFEWYIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LDLLYGMVSKKNLMEIVKKLMTHVDKAEGTTYRDELLTKIIDICSQSNYQYITNFEWYIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 ILVELTRLEGTRHGHLIAAQMLDVAIRVKAIRKFAVSQMSALLDSAHLLASSTQRNGICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ILVELTRLEGTRHGHLIAAQMLDVAIRVKAIRKFAVSQMSALLDSAHLLASSTQRNGICE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 VLYAAAWICGEFSEHLQEPHHTLEAMLRPRVTTLPGHIQAVYVQNVVKLYASILQQKEQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VLYAAAWICGEFSEHLQEPHHTLEAMLRPRVTTLPGHIQAVYVQNVVKLYASILQQKEQA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GEAEGAQAVTQLMVDRLPQFVQSADLEVQERASCILQLVKHIQKLQAKDVPVAEEVSALF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GEAEGAQAVTQLMVDRLPQFVQSADLEVQERASCILQLVKHIQKLQAKDVPVAEEVSALF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 AGELNPVAPKAQKKVPVPEGLDLDAWINEPLSDSESEDERPRAVFHEEEQRRPKHRPSEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AGELNPVAPKAQKKVPVPEGLDLDAWINEPLSDSESEDERPRAVFHEEEQRRPKHRPSEA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 DEEELARRREARKQEQANNPFYIKSSPSPQKRYQDTPGVEHIPVVQIDLSVPLKVPGLPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DEEELARRREARKQEQANNPFYIKSSPSPQKRYQDTPGVEHIPVVQIDLSVPLKVPGLPM
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 SDQYVKLEEERRHRQKLEKDKRRKKRKEKEKKGKRRHSSLPTESDEDIAPAQQVDIVTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SDQYVKLEEERRHRQKLEKDKRRKKRKEKEKKGKRRHSSLPTESDEDIAPAQQVDIVTEE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 MPENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPIQKHRNTETSKSPEKDVPMVEKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MPENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPIQKHRNTETSKSPEKDVPMVEKK
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 SKKPKKKEKKHKEKERDKEKKKEKEKKAEDLDFWLSTTPPPAPAPAPAPVPSTGELSVNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SKKPKKKEKKHKEKERDKEKKKEKEKKAEDLDFWLSTTPPPAPAPAPAPVPSTGELSVNT
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB3 VTTPKDECEDAKTEAQGEEDDAEGQDQDKKSPKPKKKKHRKEKEERTKGKKKSKKQPPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VTTPKDECEDAKTEAQGEEDDAEGQDQDKKSPKPKKKKHRKEKEERTKGKKKSKKQPPGS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB3 EEAAGEPVQNGAPEEEQLPPESSYSLLAENSYVKMTCDIRGSLQEDSQVTVAIVLENRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EEAAGEPVQNGAPEEEQLPPESSYSLLAENSYVKMTCDIRGSLQEDSQVTVAIVLENRSS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB3 SILKGMELSVLDSLNARMARPQGSSVHDGVPVPFQLPPGVSNEAQYVFTIQSIVMAQKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SILKGMELSVLDSLNARMARPQGSSVHDGVPVPFQLPPGVSNEAQYVFTIQSIVMAQKLK
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB3 GTLSFIAKNDEGATHEKLDFRLHFSCSSYLITTPCYSDAFAKLLESGDLSMSSIKVDGIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GTLSFIAKNDEGATHEKLDFRLHFSCSSYLITTPCYSDAFAKLLESGDLSMSSIKVDGIR
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB3 MSFQNLLAKICFHHHFSVVERVDSCASMYSRSIQGHHVCLLVKKGENSVSVDGKCSDSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MSFQNLLAKICFHHHFSVVERVDSCASMYSRSIQGHHVCLLVKKGENSVSVDGKCSDSTL
1150 1160 1170 1180 1190 1200
1210
pF1KB3 LSNLLEEMKATLAKC
:::::::::::::::
CCDS58 LSNLLEEMKATLAKC
1210
>>CCDS42459.1 AP3D1 gene_id:8943|Hs108|chr19 (1153 aa)
initn: 5713 init1: 5626 opt: 5626 Z-score: 3172.4 bits: 599.0 E(32554): 2.2e-170
Smith-Waterman score: 7358; 94.9% identity (94.9% similar) in 1215 aa overlap (1-1215:1-1153)
10 20 30 40 50 60
pF1KB3 MALKMVKGSIDRMFDKNLQDLVRGIRNHKEDEAKYISQCIDEIKQELKQDNIAVKANAVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MALKMVKGSIDRMFDKNLQDLVRGIRNHKEDEAKYISQCIDEIKQELKQDNIAVKANAVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KLTYLQMLGYDISWAAFNIIEVMSASKFTFKRIGYLAASQSFHEGTDVIMLTTNQIRKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KLTYLQMLGYDISWAAFNIIEVMSASKFTFKRIGYLAASQSFHEGTDVIMLTTNQIRKDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 SSPSQYDTGVALTGLSCFVTPDLARDLANDIMTLMSHTKPYIRKKAVLIMYKVFLKYPES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SSPSQYDTGVALTGLSCFVTPDLARDLANDIMTLMSHTKPYIRKKAVLIMYKVFLKYPES
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LRPAFPRLKEKLEDPDPGVQSAAVNVICELARRNPKNYLSLAPLFFKLMTSSTNNWVLIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LRPAFPRLKEKLEDPDPGVQSAAVNVICELARRNPKNYLSLAPLFFKLMTSSTNNWVLIK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 IIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMSLLYECVNTVIAVLISLSSGMPNHSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMSLLYECVNTVIAVLISLSSGMPNHSAS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 IQLCVQKLRILIEDSDQNLKYLGLLAMSKILKTHPKSVQSHKDLILQCLDDKDESIRLRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IQLCVQKLRILIEDSDQNLKYLGLLAMSKILKTHPKSVQSHKDLILQCLDDKDESIRLRA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 LDLLYGMVSKKNLMEIVKKLMTHVDKAEGTTYRDELLTKIIDICSQSNYQYITNFEWYIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LDLLYGMVSKKNLMEIVKKLMTHVDKAEGTTYRDELLTKIIDICSQSNYQYITNFEWYIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 ILVELTRLEGTRHGHLIAAQMLDVAIRVKAIRKFAVSQMSALLDSAHLLASSTQRNGICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ILVELTRLEGTRHGHLIAAQMLDVAIRVKAIRKFAVSQMSALLDSAHLLASSTQRNGICE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 VLYAAAWICGEFSEHLQEPHHTLEAMLRPRVTTLPGHIQAVYVQNVVKLYASILQQKEQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VLYAAAWICGEFSEHLQEPHHTLEAMLRPRVTTLPGHIQAVYVQNVVKLYASILQQKEQA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GEAEGAQAVTQLMVDRLPQFVQSADLEVQERASCILQLVKHIQKLQAKDVPVAEEVSALF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GEAEGAQAVTQLMVDRLPQFVQSADLEVQERASCILQLVKHIQKLQAKDVPVAEEVSALF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 AGELNPVAPKAQKKVPVPEGLDLDAWINEPLSDSESEDERPRAVFHEEEQRRPKHRPSEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AGELNPVAPKAQKKVPVPEGLDLDAWINEPLSDSESEDERPRAVFHEEEQRRPKHRPSEA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 DEEELARRREARKQEQANNPFYIKSSPSPQKRYQDTPGVEHIPVVQIDLSVPLKVPGLPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DEEELARRREARKQEQANNPFYIKSSPSPQKRYQDTPGVEHIPVVQIDLSVPLKVPGLPM
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 SDQYVKLEEERRHRQKLEKDKRRKKRKEKEKKGKRRHSSLPTESDEDIAPAQQVDIVTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SDQYVKLEEERRHRQKLEKDKRRKKRKEKEKKGKRRHSSLPTESDEDIAPAQQVDIVTEE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 MPENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPIQKHRNTETSKSPEKDVPMVEKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPIQKHRNTETSKSPEKDVPMVEKK
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 SKKPKKKEKKHKEKERDKEKKKEKEKKAEDLDFWLSTTPPPAPAPAPAPVPSTGELSVNT
:::::::::::::::::::::::::::
CCDS42 SKKPKKKEKKHKEKERDKEKKKEKEKK---------------------------------
850 860
910 920 930 940 950 960
pF1KB3 VTTPKDECEDAKTEAQGEEDDAEGQDQDKKSPKPKKKKHRKEKEERTKGKKKSKKQPPGS
:::::::::::::::::::::::::::::::
CCDS42 -----------------------------KSPKPKKKKHRKEKEERTKGKKKSKKQPPGS
870 880 890
970 980 990 1000 1010 1020
pF1KB3 EEAAGEPVQNGAPEEEQLPPESSYSLLAENSYVKMTCDIRGSLQEDSQVTVAIVLENRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEAAGEPVQNGAPEEEQLPPESSYSLLAENSYVKMTCDIRGSLQEDSQVTVAIVLENRSS
900 910 920 930 940 950
1030 1040 1050 1060 1070 1080
pF1KB3 SILKGMELSVLDSLNARMARPQGSSVHDGVPVPFQLPPGVSNEAQYVFTIQSIVMAQKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SILKGMELSVLDSLNARMARPQGSSVHDGVPVPFQLPPGVSNEAQYVFTIQSIVMAQKLK
960 970 980 990 1000 1010
1090 1100 1110 1120 1130 1140
pF1KB3 GTLSFIAKNDEGATHEKLDFRLHFSCSSYLITTPCYSDAFAKLLESGDLSMSSIKVDGIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GTLSFIAKNDEGATHEKLDFRLHFSCSSYLITTPCYSDAFAKLLESGDLSMSSIKVDGIR
1020 1030 1040 1050 1060 1070
1150 1160 1170 1180 1190 1200
pF1KB3 MSFQNLLAKICFHHHFSVVERVDSCASMYSRSIQGHHVCLLVKKGENSVSVDGKCSDSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MSFQNLLAKICFHHHFSVVERVDSCASMYSRSIQGHHVCLLVKKGENSVSVDGKCSDSTL
1080 1090 1100 1110 1120 1130
1210
pF1KB3 LSNLLEEMKATLAKC
:::::::::::::::
CCDS42 LSNLLEEMKATLAKC
1140 1150
1215 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:16:57 2016 done: Thu Nov 3 12:16:58 2016
Total Scan time: 4.510 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]