Result of FASTA (ccds) for
pF1KB3047
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3047, 1147 aa
1>>>pF1KB3047 1147 - 1147 aa - 1147 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6472+/-0.00131; mu= 7.1382+/- 0.079
mean_var=182.0143+/-36.115, 0's: 0 Z-trim(106.3): 40 B-trim: 6 in 1/49
Lambda= 0.095065
statistics sampled from 8913 (8932) to 8913 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.274), width: 16
Scan time: 5.080
The best scores are: opt bits E(32554)
CCDS3450.1 RFC1 gene_id:5981|Hs108|chr4 (1147) 7384 1026.4 0
CCDS56329.1 RFC1 gene_id:5981|Hs108|chr4 (1148) 7372 1024.8 0
>>CCDS3450.1 RFC1 gene_id:5981|Hs108|chr4 (1147 aa)
initn: 7384 init1: 7384 opt: 7384 Z-score: 5482.8 bits: 1026.4 E(32554): 0
Smith-Waterman score: 7384; 100.0% identity (100.0% similar) in 1147 aa overlap (1-1147:1-1147)
10 20 30 40 50 60
pF1KB3 MDIRKFFGVIPSGKKLVSETVKKNEKTKSDEETLKAKKGIKEIKVNSSRKEDDFKQKQPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MDIRKFFGVIPSGKKLVSETVKKNEKTKSDEETLKAKKGIKEIKVNSSRKEDDFKQKQPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KKKRIIYDSDSESEETLQVKNAKKPPEKLPVSSKPGKISRQDPVTYISETDEEDDFMCKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KKKRIIYDSDSESEETLQVKNAKKPPEKLPVSSKPGKISRQDPVTYISETDEEDDFMCKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 AASKSKENGRSTNSHLGTSNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTGSVQRSNKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AASKSKENGRSTNSHLGTSNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTGSVQRSNKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 MVASKRKELSQNTDESGLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MVASKRKELSQNTDESGLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 ARKDTEAGETFSSVQANLSKAEKHKYPHKVKTAQVSDERKSYSPRKQSKYESSKESQQHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ARKDTEAGETFSSVQANLSKAEKHKYPHKVKTAQVSDERKSYSPRKQSKYESSKESQQHS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 KSSADKIGEVSSPKASSKLAIMKRKEESSYKEIEPVASKRKENAIKLKGETKTPKKTKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KSSADKIGEVSSPKASSKLAIMKRKEESSYKEIEPVASKRKENAIKLKGETKTPKKTKSS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 PAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLES
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 IERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 TMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 TIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 QQGDQSCANKLLRWLRNWQKSSSEDKKHAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QQGDQSCANKLLRWLRNWQKSSSEDKKHAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 SLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 VDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 GAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAK
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 KDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDM
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB3 KKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYMTQFPTFPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYMTQFPTFPS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB3 WLGKHSSTGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSLLRDALVQPLTSQGVDGVQDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 WLGKHSSTGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSLLRDALVQPLTSQGVDGVQDV
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB3 VALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAIK
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB3 ASRHSTSPSLDSEYNEELNEDDSQSDEKDQDAIETDAMIKKKTKSSKPSKPEKDKEPRKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ASRHSTSPSLDSEYNEELNEDDSQSDEKDQDAIETDAMIKKKTKSSKPSKPEKDKEPRKG
1090 1100 1110 1120 1130 1140
pF1KB3 KGKSSKK
:::::::
CCDS34 KGKSSKK
>>CCDS56329.1 RFC1 gene_id:5981|Hs108|chr4 (1148 aa)
initn: 3975 init1: 3975 opt: 7372 Z-score: 5473.9 bits: 1024.8 E(32554): 0
Smith-Waterman score: 7372; 99.9% identity (99.9% similar) in 1148 aa overlap (1-1147:1-1148)
10 20 30 40 50 60
pF1KB3 MDIRKFFGVIPSGKKLVSETVKKNEKTKSDEETLKAKKGIKEIKVNSSRKEDDFKQKQPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MDIRKFFGVIPSGKKLVSETVKKNEKTKSDEETLKAKKGIKEIKVNSSRKEDDFKQKQPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KKKRIIYDSDSESEETLQVKNAKKPPEKLPVSSKPGKISRQDPVTYISETDEEDDFMCKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KKKRIIYDSDSESEETLQVKNAKKPPEKLPVSSKPGKISRQDPVTYISETDEEDDFMCKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 AASKSKENGRSTNSHLGTSNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTGSVQRSNKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AASKSKENGRSTNSHLGTSNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTGSVQRSNKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 MVASKRKELSQNTDESGLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MVASKRKELSQNTDESGLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 ARKDTEAGETFSSVQANLSKAEKHKYPHKVKTAQVSDERKSYSPRKQSKYESSKESQQHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ARKDTEAGETFSSVQANLSKAEKHKYPHKVKTAQVSDERKSYSPRKQSKYESSKESQQHS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 KSSADKIGEVSSPKASSKLAIMKRKEESSYKEIEPVASKRKENAIKLKGETKTPKKTKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KSSADKIGEVSSPKASSKLAIMKRKEESSYKEIEPVASKRKENAIKLKGETKTPKKTKSS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 PAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLES
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 IERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 IERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 TMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 TIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIG
550 560 570 580 590 600
610 620 630 640 650
pF1KB3 QQGDQSCANKLLRWLRNWQKSSSEDKKHA-KFGKFSGKDDGSSFKAALLSGPPGVGKTTT
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS56 QQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTT
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB3 ASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMD
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB3 EVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQI
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB3 KGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRA
790 800 810 820 830 840
840 850 860 870 880 890
pF1KB3 KKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGD
850 860 870 880 890 900
900 910 920 930 940 950
pF1KB3 MKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYMTQFPTFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYMTQFPTFP
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KB3 SWLGKHSSTGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSLLRDALVQPLTSQGVDGVQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SWLGKHSSTGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSLLRDALVQPLTSQGVDGVQD
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KB3 VVALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VVALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAI
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120 1130
pF1KB3 KASRHSTSPSLDSEYNEELNEDDSQSDEKDQDAIETDAMIKKKTKSSKPSKPEKDKEPRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KASRHSTSPSLDSEYNEELNEDDSQSDEKDQDAIETDAMIKKKTKSSKPSKPEKDKEPRK
1090 1100 1110 1120 1130 1140
1140
pF1KB3 GKGKSSKK
::::::::
CCDS56 GKGKSSKK
1147 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:14:06 2016 done: Thu Nov 3 12:14:06 2016
Total Scan time: 5.080 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]