FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3021, 928 aa
  1>>>pF1KB3021 928 - 928 aa - 928 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3433+/-0.000956; mu= 9.8310+/- 0.059
 mean_var=193.3016+/-38.598, 0's: 0 Z-trim(112.0): 8  B-trim: 2 in 1/54
 Lambda= 0.092248
 statistics sampled from 12824 (12829) to 12824 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.394), width:  16
 Scan time:  4.410

The best scores are:                                      opt bits E(32554)
CCDS31973.1 RB1 gene_id:5925|Hs108|chr13           ( 928) 6084 822.7       0


>>CCDS31973.1 RB1 gene_id:5925|Hs108|chr13                (928 aa)
 initn: 6084 init1: 6084 opt: 6084  Z-score: 4385.1  bits: 822.7 E(32554):    0
Smith-Waterman score: 6084; 99.9% identity (99.9% similar) in 928 aa overlap (1-928:1-928)

               10        20        30        40        50        60
pF1KB3 MPPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MPPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 CQKLKIPDHVRERAWLTWEKVSSVDEVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTEL
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS31 CQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 QKNIEISVHKFFNLLKEIDTSTKVDNAMSRLLKKYDVLFALFSKLERTCELIYLTQPSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QKNIEISVHKFFNLLKEIDTSTKVDNAMSRLLKKYDVLFALFSKLERTCELIYLTQPSSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 ISTEINSALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSPPMLLKEPYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ISTEINSALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSPPMLLKEPYK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 TAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEVLCKEHECNIDEVKNVYFKNFIPFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEVLCKEHECNIDEVKNVYFKNFIPFM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 NSLGLVTSNGLPEVENLSKRYEEIYLKNKDLDARLFLDHDKTLQTDSIDSFETQRTPRKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NSLGLVTSNGLPEVENLSKRYEEIYLKNKDLDARLFLDHDKTLQTDSIDSFETQRTPRKS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 NLDEEVNVIPPHTPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NLDEEVNVIPPHTPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 DIGYIFKEKFAKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DIGYIFKEKFAKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 IFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 NLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGPTDHLESACPLNLPLQNNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGPTDHLESACPLNLPLQNNH
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 TAADMYLSPVRSPKKKGSTTRVNSTANAETQATSAFQTQKPLKSTSLSLFYKKVYRLAYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TAADMYLSPVRSPKKKGSTTRVNSTANAETQATSAFQTQKPLKSTSLSLFYKKVYRLAYL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 RLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLK
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 FKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKTNILQYASTRPPTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKTNILQYASTRPPTLS
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 PIPHIPRSPYKFPSSPLRIPGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGESFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PIPHIPRSPYKFPSSPLRIPGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGESFG
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 TSEKFQKINQMVCNSDRVLKRSAEGSNPPKPLKKLRFDIEGSDEADGSKHLPGESKFQQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TSEKFQKINQMVCNSDRVLKRSAEGSNPPKPLKKLRFDIEGSDEADGSKHLPGESKFQQK
              850       860       870       880       890       900

              910       920        
pF1KB3 LAEMTSTRTRMQKQKMNDSMDTSNKEEK
       ::::::::::::::::::::::::::::
CCDS31 LAEMTSTRTRMQKQKMNDSMDTSNKEEK
              910       920        




928 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:07:00 2016 done: Thu Nov  3 12:07:00 2016
 Total Scan time:  4.410 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]