FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3013, 456 aa
  1>>>pF1KB3013 456 - 456 aa - 456 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8084+/-0.00123; mu= 9.5688+/- 0.073
 mean_var=84.4765+/-16.408, 0's: 0 Z-trim(101.1): 45  B-trim: 3 in 1/51
 Lambda= 0.139542
 statistics sampled from 6346 (6373) to 6346 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.547), E-opt: 0.2 (0.196), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS11669.1 PSMD12 gene_id:5718|Hs108|chr17        ( 456) 2902 594.8 6.2e-170
CCDS11670.1 PSMD12 gene_id:5718|Hs108|chr17        ( 436) 2551 524.1 1.1e-148


>>CCDS11669.1 PSMD12 gene_id:5718|Hs108|chr17             (456 aa)
 initn: 2902 init1: 2902 opt: 2902  Z-score: 3164.4  bits: 594.8 E(32554): 6.2e-170
Smith-Waterman score: 2902; 100.0% identity (100.0% similar) in 456 aa overlap (1-456:1-456)

               10        20        30        40        50        60
pF1KB3 MADGGSERADGRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MADGGSERADGRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 VSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 ERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 KYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 HNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKD
              370       380       390       400       410       420

              430       440       450      
pF1KB3 PNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ
       ::::::::::::::::::::::::::::::::::::
CCDS11 PNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ
              430       440       450      

>>CCDS11670.1 PSMD12 gene_id:5718|Hs108|chr17             (436 aa)
 initn: 2551 init1: 2551 opt: 2551  Z-score: 2782.8  bits: 524.1 E(32554): 1.1e-148
Smith-Waterman score: 2736; 95.6% identity (95.6% similar) in 456 aa overlap (1-456:1-436)

               10        20        30        40        50        60
pF1KB3 MADGGSERADGRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDM
       ::::::::::::::::::::::::::::::::::::                    ::::
CCDS11 MADGGSERADGRIVKMEVDYSATVDQRLPECAKLAK--------------------ASDM
               10        20        30                            40

               70        80        90       100       110       120
pF1KB3 VSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPI
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KB3 KLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKK
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KB3 ERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSY
              170       180       190       200       210       220

              250       260       270       280       290       300
pF1KB3 LSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIP
              230       240       250       260       270       280

              310       320       330       340       350       360
pF1KB3 KYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVE
              290       300       310       320       330       340

              370       380       390       400       410       420
pF1KB3 HNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKD
              350       360       370       380       390       400

              430       440       450      
pF1KB3 PNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ
       ::::::::::::::::::::::::::::::::::::
CCDS11 PNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ
              410       420       430      




456 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:05:05 2016 done: Thu Nov  3 12:05:05 2016
 Total Scan time:  2.830 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]