FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3003, 633 aa
  1>>>pF1KB3003 633 - 633 aa - 633 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.5500+/-0.000963; mu= -2.6940+/- 0.058
 mean_var=271.5099+/-55.528, 0's: 0 Z-trim(115.0): 6  B-trim: 235 in 1/50
 Lambda= 0.077836
 statistics sampled from 15509 (15511) to 15509 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.476), width:  16
 Scan time:  4.600

The best scores are:                                      opt bits E(32554)
CCDS12624.1 XRCC1 gene_id:7515|Hs108|chr19         ( 633) 4262 491.8 1.2e-138


>>CCDS12624.1 XRCC1 gene_id:7515|Hs108|chr19              (633 aa)
 initn: 4262 init1: 4262 opt: 4262  Z-score: 2602.7  bits: 491.8 E(32554): 1.2e-138
Smith-Waterman score: 4262; 100.0% identity (100.0% similar) in 633 aa overlap (1-633:1-633)

               10        20        30        40        50        60
pF1KB3 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 GNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 AEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVKEEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVKEEDE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SANSLRPGALFFSRINKTSPVTASDPAGPSYAAATLQASSAASSASPVSRAIGSTSKPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SANSLRPGALFFSRINKTSPVTASDPAGPSYAAATLQASSAASSASPVSRAIGSTSKPQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 SPKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPKLPAPTRTPATAPVPARAQGAVTGKPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SPKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPKLPAPTRTPATAPVPARAQGAVTGKPR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 GEGTEPRRPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GEGTEPRRPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 ICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSQRYLMAGPGSSSEEDEASHSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSQRYLMAGPGSSSEEDEASHSGG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 SGDEAPKLPQKQPQTKTKPTQAAGPSSPQKPPTPEETKAASPVLQEDIDIEGVQSEGQDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGDEAPKLPQKQPQTKTKPTQAAGPSSPQKPPTPEETKAASPVLQEDIDIEGVQSEGQDN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 GAEDSGDTEDELRRVAEQKEHRLPPGQEENGEDPYAGSTDENTDSEEHQEPPDLPVPELP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GAEDSGDTEDELRRVAEQKEHRLPPGQEENGEDPYAGSTDENTDSEEHQEPPDLPVPELP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 DFFQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DFFQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMD
              550       560       570       580       590       600

              610       620       630   
pF1KB3 NPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQA
       :::::::::::::::::::::::::::::::::
CCDS12 NPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQA
              610       620       630   




633 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:03:36 2016 done: Thu Nov  3 12:03:36 2016
 Total Scan time:  4.600 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]