FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB2507, 394 aa
  1>>>pF1KB2507 394 - 394 aa - 394 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3943+/-0.00106; mu= 15.7197+/- 0.063
 mean_var=57.6001+/-11.471, 0's: 0 Z-trim(101.8): 13  B-trim: 3 in 1/48
 Lambda= 0.168991
 statistics sampled from 6663 (6668) to 6663 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.564), E-opt: 0.2 (0.205), width:  16
 Scan time:  2.140

The best scores are:                                      opt bits E(32554)
CCDS6782.1 UGCG gene_id:7357|Hs108|chr9            ( 394) 2699 666.7  1e-191


>>CCDS6782.1 UGCG gene_id:7357|Hs108|chr9                 (394 aa)
 initn: 2699 init1: 2699 opt: 2699  Z-score: 3555.4  bits: 666.7 E(32554): 1e-191
Smith-Waterman score: 2699; 100.0% identity (100.0% similar) in 394 aa overlap (1-394:1-394)

               10        20        30        40        50        60
pF1KB2 MALLDLALEGMAVFGFVLFLVLWLMHFMAIIYTRLHLNKKATDKQPYSKLPGVSLLKPLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MALLDLALEGMAVFGFVLFLVLWLMHFMAIIYTRLHLNKKATDKQPYSKLPGVSLLKPLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB2 GVDPNLINNLETFFELDYPKYEVLLCVQDHDDPAIDVCKKLLGKYPNVDARLFIGGKKVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GVDPNLINNLETFFELDYPKYEVLLCVQDHDDPAIDVCKKLLGKYPNVDARLFIGGKKVG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB2 INPKINNLMPGYEVAKYDLIWICDSGIRVIPDTLTDMVNQMTEKVGLVHGLPYVADRQGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 INPKINNLMPGYEVAKYDLIWICDSGIRVIPDTLTDMVNQMTEKVGLVHGLPYVADRQGF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB2 AATLEQVYFGTSHPRYYISANVTGFKCVTGMSCLMRKDVLDQAGGLIAFAQYIAEDYFMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 AATLEQVYFGTSHPRYYISANVTGFKCVTGMSCLMRKDVLDQAGGLIAFAQYIAEDYFMA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB2 KAIADRGWRFAMSTQVAMQNSGSYSISQFQSRMIRWTKLRINMLPATIICEPISECFVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 KAIADRGWRFAMSTQVAMQNSGSYSISQFQSRMIRWTKLRINMLPATIICEPISECFVAS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB2 LIIGWAAHHVFRWDIMVFFMCHCLAWFIFDYIQLRGVQGGTLCFSKLDYAVAWFIRESMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LIIGWAAHHVFRWDIMVFFMCHCLAWFIFDYIQLRGVQGGTLCFSKLDYAVAWFIRESMT
              310       320       330       340       350       360

              370       380       390    
pF1KB2 IYIFLSALWDPTISWRTGRYRLRCGGTAEEILDV
       ::::::::::::::::::::::::::::::::::
CCDS67 IYIFLSALWDPTISWRTGRYRLRCGGTAEEILDV
              370       380       390    




394 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:28:39 2016 done: Thu Nov  3 20:28:39 2016
 Total Scan time:  2.140 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]