FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB2048, 1017 aa
  1>>>pF1KB2048 1017 - 1017 aa - 1017 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4118+/-0.00112; mu= 6.0413+/- 0.066
 mean_var=147.3000+/-30.081, 0's: 0 Z-trim(106.6): 87  B-trim: 3 in 1/49
 Lambda= 0.105675
 statistics sampled from 9013 (9094) to 9013 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.279), width:  16
 Scan time:  3.320

The best scores are:                                      opt bits E(32554)
CCDS13759.1 HIRA gene_id:7290|Hs108|chr22          (1017) 6738 1040.1       0


>>CCDS13759.1 HIRA gene_id:7290|Hs108|chr22               (1017 aa)
 initn: 6738 init1: 6738 opt: 6738  Z-score: 5558.7  bits: 1040.1 E(32554):    0
Smith-Waterman score: 6738; 99.9% identity (99.9% similar) in 1017 aa overlap (1-1017:1-1017)

               10        20        30        40        50        60
pF1KB2 MKLLKPTWVNHNGKPIFSVDIHPDGTKFATGGQGQDSGKVVIWNMSPVLQEDDEKDENIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKLLKPTWVNHNGKPIFSVDIHPDGTKFATGGQGQDSGKVVIWNMSPVLQEDDEKDENIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB2 KMLCQMDNHLACVNCVRWSNSGMYLPSGGDDKLIMVWKRATYIGPSTVFGSSGKLANVEQ
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS13 KMLCQMDNHLACVNCVRWSNSGMYLASGGDDKLIMVWKRATYIGPSTVFGSSGKLANVEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB2 WRCVSILRNHSGDVMDVAWSPHDAWLASCSVDNTVVIWNAVKFPEILATLRGHSGLVKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WRCVSILRNHSGDVMDVAWSPHDAWLASCSVDNTVVIWNAVKFPEILATLRGHSGLVKGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB2 TWDPVGKYIASQADDRSLKVWRTLDWQLETSITKPFDECGGTTHVLRLSWSPDGHYLVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TWDPVGKYIASQADDRSLKVWRTLDWQLETSITKPFDECGGTTHVLRLSWSPDGHYLVSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB2 HAMNNSGPTAQIIEREGWKTNMDFVGHRKAVTVVKFNPKIFKKKQKNGSSAKPSCPYCCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HAMNNSGPTAQIIEREGWKTNMDFVGHRKAVTVVKFNPKIFKKKQKNGSSAKPSCPYCCC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB2 AVGSKDRSLSVWLTCLKRPLVVIHELFDKSIMDISWTLNGLGILVCSMDGSVAFLDFSQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AVGSKDRSLSVWLTCLKRPLVVIHELFDKSIMDISWTLNGLGILVCSMDGSVAFLDFSQD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB2 ELGDPLSEEEKSRIHQSTYGKSLAIMTEAQLSTAVIENPEMLKYQRRQQQQQLDQKSAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ELGDPLSEEEKSRIHQSTYGKSLAIMTEAQLSTAVIENPEMLKYQRRQQQQQLDQKSAAT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB2 REMGSATSVAGVVNGESLEDIRKNLLKKQVETRTADGRRRITPLCIAQLDTGDFSTAFFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 REMGSATSVAGVVNGESLEDIRKNLLKKQVETRTADGRRRITPLCIAQLDTGDFSTAFFN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB2 SIPLSGSLAGTMLSSHSSPQLLPLDSSTPNSFGASKPCTEPVVAASARPAGDSVNKDSMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SIPLSGSLAGTMLSSHSSPQLLPLDSSTPNSFGASKPCTEPVVAASARPAGDSVNKDSMN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB2 ATSTPAALSPSVLTTPSKIEPMKAFDSRFTERSKATPGAPALTSMTPTAVERLKEQNLVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ATSTPAALSPSVLTTPSKIEPMKAFDSRFTERSKATPGAPALTSMTPTAVERLKEQNLVK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB2 ELRPRDLLESSSDSDEKVPLAKASSLSKRKLELEVETVEKKKKGRPRKDSRLMPVSLSVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ELRPRDLLESSSDSDEKVPLAKASSLSKRKLELEVETVEKKKKGRPRKDSRLMPVSLSVQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB2 SPAALTAEKEAMCLSAPALALKLPIPSPQRAFTLQVSSDPSMYIEVENEVTVVGGVKLSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPAALTAEKEAMCLSAPALALKLPIPSPQRAFTLQVSSDPSMYIEVENEVTVVGGVKLSR
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB2 LKCNREGKEWETVLTSRILTAAGSCDVVCVACEKRMLSVFSTCGRRLLSPILLPSPISTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LKCNREGKEWETVLTSRILTAAGSCDVVCVACEKRMLSVFSTCGRRLLSPILLPSPISTL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB2 HCTGSYVMALTAAATLSVWDVHRQVVVVKEESLHSILAGSDMTVSQILLTQHGIPVMNLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HCTGSYVMALTAAATLSVWDVHRQVVVVKEESLHSILAGSDMTVSQILLTQHGIPVMNLS
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB2 DGKAYCFNPSLSTWNLVSDKQDSLAQCADFRSSLPSQDAMLCSGPLAIIQGRTSNSGRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DGKAYCFNPSLSTWNLVSDKQDSLAQCADFRSSLPSQDAMLCSGPLAIIQGRTSNSGRQA
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB2 ARLFSVPHVVQQETTLAYLENQVAAALTLQSSHEYRHWLLVYARYLVNEGFEYRLREICK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ARLFSVPHVVQQETTLAYLENQVAAALTLQSSHEYRHWLLVYARYLVNEGFEYRLREICK
              910       920       930       940       950       960

              970       980       990      1000      1010       
pF1KB2 DLLGPVHYSTGSQWESTVVGLRKRELLKELLPVIGQNLRFQRLFTECQEQLDILRDK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLLGPVHYSTGSQWESTVVGLRKRELLKELLPVIGQNLRFQRLFTECQEQLDILRDK
              970       980       990      1000      1010       




1017 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:59:22 2016 done: Thu Nov  3 11:59:23 2016
 Total Scan time:  3.320 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]