FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0989, 135 aa
  1>>>pF1KB0989 135 - 135 aa - 135 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5418+/-0.000549; mu= 14.1255+/- 0.034
 mean_var=122.3572+/-24.827, 0's: 0 Z-trim(118.0): 17  B-trim: 0 in 0/51
 Lambda= 0.115947
 statistics sampled from 18852 (18869) to 18852 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.58), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS6118.1 3 gene_id:157848|Hs108|chr8             ( 135)  944 166.8 3.7e-42


>>CCDS6118.1 3 gene_id:157848|Hs108|chr8                  (135 aa)
 initn: 944 init1: 944 opt: 944  Z-score: 870.3  bits: 166.8 E(32554): 3.7e-42
Smith-Waterman score: 944; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135)

               10        20        30        40        50        60
pF1KB0 MQQGQLAPGSRLCSGPWGLPELQPAAPSSSAAQLPWGESWGEEADTPACLSASGVWFQNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MQQGQLAPGSRLCSGPWGLPELQPAAPSSSAAQLPWGESWGEEADTPACLSASGVWFQNR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 RTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENEDDEYNKPLDPDSDDEKIRLLLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENEDDEYNKPLDPDSDDEKIRLLLRK
               70        80        90       100       110       120

              130     
pF1KB0 HRAAFSVLSLGAHSV
       :::::::::::::::
CCDS61 HRAAFSVLSLGAHSV
              130     




135 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:27:46 2016 done: Sat Nov  5 21:27:46 2016
 Total Scan time:  2.060 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]