Result of FASTA (omim) for
pF1KB0983
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0983, 240 aa
1>>>pF1KB0983 240 - 240 aa - 240 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.2273+/-0.00046; mu= -24.4816+/- 0.029
mean_var=656.3681+/-137.527, 0's: 0 Z-trim(125.3): 44 B-trim: 864 in 1/57
Lambda= 0.050061
statistics sampled from 48769 (48856) to 48769 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.573), width: 16
Scan time: 6.910
The best scores are: opt bits E(85289)
NP_073719 (OMIM: 176270,182279,209850) small nucle ( 240) 1720 137.8 1.6e-32
NP_073716 (OMIM: 176270,182279,209850) small nucle ( 240) 1720 137.8 1.6e-32
NP_003088 (OMIM: 176270,182279,209850) small nucle ( 240) 1720 137.8 1.6e-32
NP_073718 (OMIM: 176270,182279,209850) small nucle ( 240) 1720 137.8 1.6e-32
NP_073717 (OMIM: 176270,182279,209850) small nucle ( 240) 1720 137.8 1.6e-32
NP_937859 (OMIM: 117650,182282) small nuclear ribo ( 240) 1649 132.7 5.6e-31
NP_003082 (OMIM: 117650,182282) small nuclear ribo ( 231) 1550 125.5 7.8e-29
>>NP_073719 (OMIM: 176270,182279,209850) small nuclear r (240 aa)
initn: 1720 init1: 1720 opt: 1720 Z-score: 704.8 bits: 137.8 E(85289): 1.6e-32
Smith-Waterman score: 1720; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KB0 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
190 200 210 220 230 240
>>NP_073716 (OMIM: 176270,182279,209850) small nuclear r (240 aa)
initn: 1720 init1: 1720 opt: 1720 Z-score: 704.8 bits: 137.8 E(85289): 1.6e-32
Smith-Waterman score: 1720; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KB0 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
190 200 210 220 230 240
>>NP_003088 (OMIM: 176270,182279,209850) small nuclear r (240 aa)
initn: 1720 init1: 1720 opt: 1720 Z-score: 704.8 bits: 137.8 E(85289): 1.6e-32
Smith-Waterman score: 1720; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KB0 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
190 200 210 220 230 240
>>NP_073718 (OMIM: 176270,182279,209850) small nuclear r (240 aa)
initn: 1720 init1: 1720 opt: 1720 Z-score: 704.8 bits: 137.8 E(85289): 1.6e-32
Smith-Waterman score: 1720; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KB0 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
190 200 210 220 230 240
>>NP_073717 (OMIM: 176270,182279,209850) small nuclear r (240 aa)
initn: 1720 init1: 1720 opt: 1720 Z-score: 704.8 bits: 137.8 E(85289): 1.6e-32
Smith-Waterman score: 1720; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KB0 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
190 200 210 220 230 240
>>NP_937859 (OMIM: 117650,182282) small nuclear ribonucl (240 aa)
initn: 1649 init1: 1649 opt: 1649 Z-score: 677.1 bits: 132.7 E(85289): 5.6e-31
Smith-Waterman score: 1649; 92.9% identity (99.2% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KB0 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: :
NP_937 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
:::::::::::::::::::::::::::::::::::::::::::::.:::::::.:::::.
NP_937 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
::::::::::::::::::::::::::::::::::.:::::::::::::::::: ::::.:
NP_937 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
:..::::.:.::::::::::::.:.::.::::.:::::::::::::.:::::::::::::
NP_937 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP
190 200 210 220 230 240
>>NP_003082 (OMIM: 117650,182282) small nuclear ribonucl (231 aa)
initn: 1550 init1: 1550 opt: 1550 Z-score: 638.7 bits: 125.5 E(85289): 7.8e-29
Smith-Waterman score: 1550; 92.6% identity (99.1% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB0 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: :
NP_003 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
:::::::::::::::::::::::::::::::::::::::::::::.:::::::.:::::.
NP_003 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
::::::::::::::::::::::::::::::::::.:::::::::::::::::: ::::.:
NP_003 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
:..::::.:.::::::::::::.:.::.::::.:::::::::::::.::
NP_003 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL
190 200 210 220 230
240 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:00:56 2016 done: Sat Nov 5 18:00:57 2016
Total Scan time: 6.910 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]