FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0963, 193 aa
  1>>>pF1KB0963 193 - 193 aa - 193 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8644+/-0.000907; mu= 7.1360+/- 0.053
 mean_var=180.1747+/-42.492, 0's: 0 Z-trim(112.0): 100  B-trim: 674 in 1/48
 Lambda= 0.095549
 statistics sampled from 12709 (12824) to 12709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.394), width:  16
 Scan time:  1.440

The best scores are:                                      opt bits E(32554)
CCDS9015.1 CSRP2 gene_id:1466|Hs108|chr12          ( 193) 1417 206.7 7.1e-54
CCDS1413.1 CSRP1 gene_id:1465|Hs108|chr1           ( 193) 1159 171.2 3.6e-43
CCDS7848.1 CSRP3 gene_id:8048|Hs108|chr11          ( 194)  977 146.1 1.3e-35


>>CCDS9015.1 CSRP2 gene_id:1466|Hs108|chr12               (193 aa)
 initn: 1417 init1: 1417 opt: 1417  Z-score: 1080.7  bits: 206.7 E(32554): 7.1e-54
Smith-Waterman score: 1417; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KB0 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 CYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 CYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 RCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 RCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGF
              130       140       150       160       170       180

              190   
pF1KB0 GYGQGAGALVHAQ
       :::::::::::::
CCDS90 GYGQGAGALVHAQ
              190   

>>CCDS1413.1 CSRP1 gene_id:1465|Hs108|chr1                (193 aa)
 initn: 1511 init1: 1159 opt: 1159  Z-score: 888.5  bits: 171.2 E(32554): 3.6e-43
Smith-Waterman score: 1159; 79.3% identity (91.7% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KB0 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKS
       :: ::::.:::.: .::: ::::::.: :::. :::::::.:::::::::.: :::::::
CCDS14 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 CYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCS
       ::::::::::::::::::::. :.:: :::: : .  ::::::::.:::::: ::.:.: 
CCDS14 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 RCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGF
       ::...::::::.::::: ::: :::::::::.::::::..:.::::::::::::::::::
CCDS14 RCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGF
              130       140       150       160       170       180

              190   
pF1KB0 GYGQGAGALVHAQ
       :.:::::::::..
CCDS14 GFGQGAGALVHSE
              190   

>>CCDS7848.1 CSRP3 gene_id:8048|Hs108|chr11               (194 aa)
 initn: 989 init1: 523 opt: 977  Z-score: 752.9  bits: 146.1 E(32554): 1.3e-35
Smith-Waterman score: 977; 69.0% identity (85.3% similar) in 184 aa overlap (1-183:1-184)

               10        20        30        40        50        60
pF1KB0 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKS
       :: :::: ::::: .:::::::.::.:::::. :: ::.::: ::::::: :. ::::: 
CCDS78 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV
               10        20        30        40        50        60

               70        80        90        100       110         
pF1KB0 CYGKKYGPKGYGYGQGAGTLNMDRGERLGIK-PESVQPHRPTTNPNTSKFAQKYGGAEKC
       :::..::::: ::::::: :. : ::.::..  .: .: : .:. : :::. :.: .:::
CCDS78 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVTTSNPSKFTAKFGESEKC
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB0 SRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG
        ::: :::::::..:.::::::.::::: ::::::::..:.:.::.::: :::::::: :
CCDS78 PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTG
              130       140       150       160       170       180

     180       190   
pF1KB0 FGYGQGAGALVHAQ
       .:.:          
CCDS78 IGFGGLTQQVEKKE
              190    




193 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:31:05 2016 done: Sat Nov  5 17:31:06 2016
 Total Scan time:  1.440 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]