Result of FASTA (omim) for
pF1KB0934
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0934, 381 aa
1>>>pF1KB0934 381 - 381 aa - 381 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3311+/-0.000417; mu= 7.5612+/- 0.026
mean_var=152.8561+/-31.121, 0's: 0 Z-trim(116.0): 194 B-trim: 463 in 2/55
Lambda= 0.103737
statistics sampled from 26708 (26926) to 26708 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.316), width: 16
Scan time: 7.450
The best scores are: opt bits E(85289)
XP_016861143 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 381) 2526 390.0 4.8e-108
XP_016861144 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 381) 2526 390.0 4.8e-108
NP_009213 (OMIM: 609247) E3 ubiquitin-protein liga ( 381) 2526 390.0 4.8e-108
XP_011510675 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 381) 2526 390.0 4.8e-108
NP_899237 (OMIM: 609247) E3 ubiquitin-protein liga ( 381) 2526 390.0 4.8e-108
XP_011510676 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 381) 2526 390.0 4.8e-108
XP_016861149 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 250) 1677 262.8 6.2e-70
XP_016861146 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 1641 257.5 2.7e-68
XP_016861148 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 1641 257.5 2.7e-68
XP_005247149 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 1641 257.5 2.7e-68
XP_016861147 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 1641 257.5 2.7e-68
XP_016861145 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 1641 257.5 2.7e-68
XP_011510678 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 1641 257.5 2.7e-68
XP_016861150 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 193) 1231 196.0 6.3e-50
NP_001307287 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 1104 177.2 5.2e-44
NP_056343 (OMIM: 610431) E3 ubiquitin-protein liga ( 350) 1104 177.2 5.2e-44
NP_001307286 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 1104 177.2 5.2e-44
NP_001307288 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 1104 177.2 5.2e-44
NP_001307289 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 1104 177.2 5.2e-44
NP_001307290 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 1104 177.2 5.2e-44
NP_001307285 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 1104 177.2 5.2e-44
XP_016879916 (OMIM: 610431) PREDICTED: E3 ubiquiti ( 350) 1104 177.2 5.2e-44
NP_001307291 (OMIM: 610431) E3 ubiquitin-protein l ( 315) 1081 173.7 5.2e-43
NP_001307294 (OMIM: 610431) E3 ubiquitin-protein l ( 315) 1081 173.7 5.2e-43
NP_001307292 (OMIM: 610431) E3 ubiquitin-protein l ( 315) 1081 173.7 5.2e-43
NP_001307293 (OMIM: 610431) E3 ubiquitin-protein l ( 315) 1081 173.7 5.2e-43
NP_859061 (OMIM: 612063) E3 ubiquitin-protein liga ( 429) 756 125.2 2.9e-28
XP_016879917 (OMIM: 610431) PREDICTED: E3 ubiquiti ( 227) 395 70.9 3.3e-12
NP_057204 (OMIM: 300379,300978) E3 ubiquitin-prote ( 624) 267 52.1 4.1e-06
NP_899196 (OMIM: 300379,300978) E3 ubiquitin-prote ( 624) 267 52.1 4.1e-06
NP_078815 (OMIM: 300439) E3 ubiquitin-protein liga ( 402) 244 48.5 3.2e-05
NP_919445 (OMIM: 300439) E3 ubiquitin-protein liga ( 428) 242 48.2 4.2e-05
NP_001127809 (OMIM: 612489) RING finger protein 24 ( 148) 234 46.7 4.3e-05
NP_009150 (OMIM: 612489) RING finger protein 24 is ( 148) 234 46.7 4.3e-05
NP_001308678 (OMIM: 612489) RING finger protein 24 ( 148) 234 46.7 4.3e-05
XP_011527448 (OMIM: 612489) PREDICTED: RING finger ( 163) 234 46.7 4.6e-05
NP_001127810 (OMIM: 612489) RING finger protein 24 ( 169) 234 46.7 4.7e-05
XP_016883109 (OMIM: 612489) PREDICTED: RING finger ( 169) 234 46.7 4.7e-05
XP_016883110 (OMIM: 612489) PREDICTED: RING finger ( 169) 234 46.7 4.7e-05
XP_011527447 (OMIM: 612489) PREDICTED: RING finger ( 169) 234 46.7 4.7e-05
XP_016869785 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 402) 234 47.0 9.1e-05
XP_016869786 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 402) 234 47.0 9.1e-05
NP_115549 (OMIM: 612062) E3 ubiquitin-protein liga ( 836) 239 48.0 9.4e-05
XP_011528738 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841) 239 48.0 9.5e-05
XP_011528740 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841) 239 48.0 9.5e-05
XP_011528737 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841) 239 48.0 9.5e-05
XP_016884479 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841) 239 48.0 9.5e-05
XP_011528739 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841) 239 48.0 9.5e-05
XP_011516014 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 234 47.1 9.6e-05
XP_011516015 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 234 47.1 9.6e-05
>>XP_016861143 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr (381 aa)
initn: 2526 init1: 2526 opt: 2526 Z-score: 2060.7 bits: 390.0 E(85289): 4.8e-108
Smith-Waterman score: 2526; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)
10 20 30 40 50 60
pF1KB0 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
310 320 330 340 350 360
370 380
pF1KB0 HDVVVQLQPNGERDYNIANTV
:::::::::::::::::::::
XP_016 HDVVVQLQPNGERDYNIANTV
370 380
>>XP_016861144 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr (381 aa)
initn: 2526 init1: 2526 opt: 2526 Z-score: 2060.7 bits: 390.0 E(85289): 4.8e-108
Smith-Waterman score: 2526; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)
10 20 30 40 50 60
pF1KB0 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
310 320 330 340 350 360
370 380
pF1KB0 HDVVVQLQPNGERDYNIANTV
:::::::::::::::::::::
XP_016 HDVVVQLQPNGERDYNIANTV
370 380
>>NP_009213 (OMIM: 609247) E3 ubiquitin-protein ligase R (381 aa)
initn: 2526 init1: 2526 opt: 2526 Z-score: 2060.7 bits: 390.0 E(85289): 4.8e-108
Smith-Waterman score: 2526; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)
10 20 30 40 50 60
pF1KB0 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
310 320 330 340 350 360
370 380
pF1KB0 HDVVVQLQPNGERDYNIANTV
:::::::::::::::::::::
NP_009 HDVVVQLQPNGERDYNIANTV
370 380
>>XP_011510675 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr (381 aa)
initn: 2526 init1: 2526 opt: 2526 Z-score: 2060.7 bits: 390.0 E(85289): 4.8e-108
Smith-Waterman score: 2526; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)
10 20 30 40 50 60
pF1KB0 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
310 320 330 340 350 360
370 380
pF1KB0 HDVVVQLQPNGERDYNIANTV
:::::::::::::::::::::
XP_011 HDVVVQLQPNGERDYNIANTV
370 380
>>NP_899237 (OMIM: 609247) E3 ubiquitin-protein ligase R (381 aa)
initn: 2526 init1: 2526 opt: 2526 Z-score: 2060.7 bits: 390.0 E(85289): 4.8e-108
Smith-Waterman score: 2526; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)
10 20 30 40 50 60
pF1KB0 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
310 320 330 340 350 360
370 380
pF1KB0 HDVVVQLQPNGERDYNIANTV
:::::::::::::::::::::
NP_899 HDVVVQLQPNGERDYNIANTV
370 380
>>XP_011510676 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr (381 aa)
initn: 2526 init1: 2526 opt: 2526 Z-score: 2060.7 bits: 390.0 E(85289): 4.8e-108
Smith-Waterman score: 2526; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)
10 20 30 40 50 60
pF1KB0 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
310 320 330 340 350 360
370 380
pF1KB0 HDVVVQLQPNGERDYNIANTV
:::::::::::::::::::::
XP_011 HDVVVQLQPNGERDYNIANTV
370 380
>>XP_016861149 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr (250 aa)
initn: 1677 init1: 1677 opt: 1677 Z-score: 1376.5 bits: 262.8 E(85289): 6.2e-70
Smith-Waterman score: 1677; 100.0% identity (100.0% similar) in 250 aa overlap (132-381:1-250)
110 120 130 140 150 160
pF1KB0 CNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDE
::::::::::::::::::::::::::::::
XP_016 MGSNDIEVLKKIDIPSVFIGESSANSLKDE
10 20 30
170 180 190 200 210 220
pF1KB0 FTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKD
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB0 QLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB0 KQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDY
160 170 180 190 200 210
350 360 370 380
pF1KB0 EEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
::::::::::::::::::::::::::::::::::::::::
XP_016 EEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
220 230 240 250
>>XP_016861146 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr (262 aa)
initn: 1641 init1: 1641 opt: 1641 Z-score: 1347.1 bits: 257.5 E(85289): 2.7e-68
Smith-Waterman score: 1641; 99.6% identity (100.0% similar) in 245 aa overlap (137-381:18-262)
110 120 130 140 150 160
pF1KB0 KVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEK
.:::::::::::::::::::::::::::::
XP_016 MLILMTSLAWDPTTVSTVEVLKKIDIPSVFIGESSANSLKDEFTYEK
10 20 30 40
170 180 190 200 210 220
pF1KB0 GGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKL
50 60 70 80 90 100
230 240 250 260 270 280
pF1KB0 PVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV
110 120 130 140 150 160
290 300 310 320 330 340
pF1KB0 PSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDN
170 180 190 200 210 220
350 360 370 380
pF1KB0 EDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
:::::::::::::::::::::::::::::::::::
XP_016 EDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
230 240 250 260
>>XP_016861148 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr (262 aa)
initn: 1641 init1: 1641 opt: 1641 Z-score: 1347.1 bits: 257.5 E(85289): 2.7e-68
Smith-Waterman score: 1641; 99.6% identity (100.0% similar) in 245 aa overlap (137-381:18-262)
110 120 130 140 150 160
pF1KB0 KVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEK
.:::::::::::::::::::::::::::::
XP_016 MLILMTSLAWDPTTVSTVEVLKKIDIPSVFIGESSANSLKDEFTYEK
10 20 30 40
170 180 190 200 210 220
pF1KB0 GGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKL
50 60 70 80 90 100
230 240 250 260 270 280
pF1KB0 PVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV
110 120 130 140 150 160
290 300 310 320 330 340
pF1KB0 PSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDN
170 180 190 200 210 220
350 360 370 380
pF1KB0 EDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
:::::::::::::::::::::::::::::::::::
XP_016 EDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
230 240 250 260
>>XP_005247149 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr (262 aa)
initn: 1641 init1: 1641 opt: 1641 Z-score: 1347.1 bits: 257.5 E(85289): 2.7e-68
Smith-Waterman score: 1641; 99.6% identity (100.0% similar) in 245 aa overlap (137-381:18-262)
110 120 130 140 150 160
pF1KB0 KVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEK
.:::::::::::::::::::::::::::::
XP_005 MLILMTSLAWDPTTVSTVEVLKKIDIPSVFIGESSANSLKDEFTYEK
10 20 30 40
170 180 190 200 210 220
pF1KB0 GGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKL
50 60 70 80 90 100
230 240 250 260 270 280
pF1KB0 PVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV
110 120 130 140 150 160
290 300 310 320 330 340
pF1KB0 PSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDN
170 180 190 200 210 220
350 360 370 380
pF1KB0 EDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
:::::::::::::::::::::::::::::::::::
XP_005 EDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
230 240 250 260
381 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:26:30 2016 done: Sat Nov 5 21:26:31 2016
Total Scan time: 7.450 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]