Result of FASTA (ccds) for
pF1KB0934
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0934, 381 aa
1>>>pF1KB0934 381 - 381 aa - 381 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9852+/-0.00092; mu= 9.2097+/- 0.056
mean_var=120.8819+/-24.284, 0's: 0 Z-trim(108.9): 90 B-trim: 67 in 1/52
Lambda= 0.116652
statistics sampled from 10405 (10507) to 10405 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.323), width: 16
Scan time: 2.820
The best scores are: opt bits E(32554)
CCDS3146.1 RNF13 gene_id:11342|Hs108|chr3 ( 381) 2526 436.2 2.3e-122
CCDS11060.1 RNF167 gene_id:26001|Hs108|chr17 ( 350) 1104 196.8 2.4e-50
CCDS82040.1 RNF167 gene_id:26001|Hs108|chr17 ( 315) 1081 193.0 3.2e-49
CCDS42475.1 ZNRF4 gene_id:148066|Hs108|chr19 ( 429) 756 138.3 1.2e-32
>>CCDS3146.1 RNF13 gene_id:11342|Hs108|chr3 (381 aa)
initn: 2526 init1: 2526 opt: 2526 Z-score: 2310.2 bits: 436.2 E(32554): 2.3e-122
Smith-Waterman score: 2526; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)
10 20 30 40 50 60
pF1KB0 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINE
310 320 330 340 350 360
370 380
pF1KB0 HDVVVQLQPNGERDYNIANTV
:::::::::::::::::::::
CCDS31 HDVVVQLQPNGERDYNIANTV
370 380
>>CCDS11060.1 RNF167 gene_id:26001|Hs108|chr17 (350 aa)
initn: 1106 init1: 1085 opt: 1104 Z-score: 1017.4 bits: 196.8 E(32554): 2.4e-50
Smith-Waterman score: 1112; 53.3% identity (79.7% similar) in 306 aa overlap (31-327:21-325)
10 20 30 40 50 60
pF1KB0 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP
:... : : . .:::. : :::: :: :
CCDS11 MHPAAFPLPVVVAAVLWGAAPTRGLIRATSDHNASMDFADLPALFGATLS
10 20 30 40 50
70 80 90 100 110 120
pF1KB0 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI
:::.:::....:.::: ::.::: ....::.:.::.:::::.::::::.::: ::.
CCDS11 QEGLQGFLVEAHPDNACSPIAPPPPAPVNGSVFIALLRRFDCNFDLKVLNAQKAGYGAAV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB0 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL
::::.:..:..: :. :. ..: :::::::: :.. :. :.::::....:::. ..::
CCDS11 VHNVNSNELLNMVWNSEEIQQQIWIPSVFIGERSSEYLRALFVYEKGARVLLVPDNTFPL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB0 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
:::::: :::. .. . ::.. .: :.: .:::: :.:::..:.: ..:::.::::
CCDS11 GYYLIPFTGIVGLLVLAMGAVMIARCIQHRKRLQRNRLTKEQLKQIPTHDYQKGDQYDVC
180 190 200 210 220 230
250 260 270 280 290
pF1KB0 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSS-
::::::::::::::.:::.:::: .:::::::.:.::::.::: : . :: :.. ...
CCDS11 AICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEETQG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 QEENE--------VTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDS
:::.. ..:.:::: .. . :::.:.
CCDS11 QEEGDEGEPRDHPASERTPLLGSSPTLPT-SFGSLAPAPLVFPGPSTDPPLSPPSSPVIL
300 310 320 330 340
360 370 380
pF1KB0 SDAENEINEHDVVVQLQPNGERDYNIANTV
CCDS11 V
350
>>CCDS82040.1 RNF167 gene_id:26001|Hs108|chr17 (315 aa)
initn: 1084 init1: 1063 opt: 1081 Z-score: 997.1 bits: 193.0 E(32554): 3.2e-49
Smith-Waterman score: 1089; 54.3% identity (80.3% similar) in 289 aa overlap (48-327:3-290)
20 30 40 50 60 70
pF1KB0 ILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENAC
: :::: :: : :::.:::....:.:::
CCDS82 MDFADLPALFGATLSQEGLQGFLVEAHPDNAC
10 20 30
80 90 100 110 120 130
pF1KB0 EPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGSNDI
::.::: ....::.:.::.:::::.::::::.::: ::.::::.:..:..: :.
CCDS82 SPIAPPPPAPVNGSVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB0 EVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLIL
:. ..: :::::::: :.. :. :.::::....:::. ..:: :::::: :::. ..
CCDS82 EIQQQIWIPSVFIGERSSEYLRALFVYEKGARVLLVPDNTFPLGYYLIPFTGIVGLLVLA
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB0 IVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILP
. ::.. .: :.: .:::: :.:::..:.: ..:::.::::::::::::::::::.::
CCDS82 MGAVMIARCIQHRKRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLP
160 170 180 190 200 210
260 270 280 290 300
pF1KB0 CSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSS-QEENE--------VTEH
:.:::: .:::::::.:.::::.::: : . :: :.. ... :::.. ..:.
CCDS82 CAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEETQGQEEGDEGEPRDHPASER
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB0 TPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINEHDVVVQLQ
:::: .. . :::.:.
CCDS82 TPLLGSSPTLPT-SFGSLAPAPLVFPGPSTDPPLSPPSSPVILV
280 290 300 310
>>CCDS42475.1 ZNRF4 gene_id:148066|Hs108|chr19 (429 aa)
initn: 620 init1: 281 opt: 756 Z-score: 699.5 bits: 138.3 E(32554): 1.2e-32
Smith-Waterman score: 756; 41.1% identity (69.0% similar) in 316 aa overlap (18-321:80-389)
10 20 30 40
pF1KB0 MLLSIGMLMLSATQVYTILTVQLFAFLNLL--PVEADILAYNFENAS
...:. . :.:: :..: . : .:.:
CCDS42 KASCLPPPVGPSSTQTAKRVTMGWPRPGRALVAVKALLVLSLLQVPAQAVVRAVLEDNSS
50 60 70 80 90 100
50 60 70 80 90 100
pF1KB0 QT-FDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNF
.. : :::: :: : ::..:.:.. :: :::.:: : . . : :. :::::: ::.:
CCDS42 SVDFADLPALFGVPLAPEGIRGYLMEVKPANACHPIEAPRLGNRSLGA-IVLIRRYDCTF
110 120 130 140 150 160
110 120 130 140 150 160
pF1KB0 DIKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTY
:.:::::::::..::::::: ::::.:: .. .: :::::..:.....:. .
CCDS42 DLKVLNAQRAGFEAAIVHNVHSDDLVSMTHVYEDLRGQIAIPSVFVSEAASQDLRVILGC
170 180 190 200 210 220
170 180 190 200 210
pF1KB0 EKGGHLILVPEFSLPLEYYLIPFLII---VGICLILIV-IFMITKFVQDRHRA---RRNR
.:..: .:.:. . : : . .: : :.: :.. . . .: .:
CCDS42 NKSAHALLLPDDPPCHDLGCHPVLTVSWVLGCTLALVVSAFFVLNHLWLWAQACCSHRRP
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB0 LRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKT-KK
.. . .: :. : . :.:::::::::.::.:.::::::.:::::.:::.... ..
CCDS42 VKTSTCQKAQVRTFTWHN--DLCAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRR
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB0 TCPVCKQKVVPSQGDSDSDTDSSQEENE-VTEHTPLLRPLASVSAQSFGALSESRSHQNM
.::::::.:. .. . :: : : ..:. . : : :. ....:
CCDS42 SCPVCKQSVAATEDSFDSTTYSFRDEDPSLPGHRP---PIWAIQVQLRSRRLELLGRASP
350 360 370 380 390 400
340 350 360 370 380
pF1KB0 TESSDYEEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
CCDS42 HCHCSTTSLEAEYTTVSSAPPEAPGQ
410 420
381 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:26:29 2016 done: Sat Nov 5 21:26:30 2016
Total Scan time: 2.820 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]