Restriction map for
pF1KB0921
(Circular) (Six-base) MAPSORT of: pF1KB0921.seq Check: 1186 from: 1 to: 3476
pF1KB0921 3476 bp
With 182 enzymes: SgfI *
October 7, 2009 14:14 ..
AccI GT'mk_AC
Cuts at: 514 514
Size: 3476
Acc65I G'GTAC_C
Cuts at: 386 492 386
Size: 106 3370
AclI AA'CG_TT
Cuts at: 3316 3316
Size: 3476
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1301 1733 2480 2748 1301
Size: 432 747 268 2029
Fragments arranged by size:
2029 747 432 268
AflIII A'CryG_T
Cuts at: 828 1932 2909 828
Size: 1104 977 1395
Fragments arranged by size:
1395 1104 977
AgeI A'CCGG_T
Cuts at: 1864 1864
Size: 3476
AlwNI CAG_nnn'CTG
Cuts at: 781 2348 781
Size: 1567 1909
ApaLI G'TGCA_C
Cuts at: 2246 2246
Size: 3476
ApoI r'AATT_y
Cuts at: 480 2829 3085 480
Size: 2349 256 871
Fragments arranged by size:
2349 871 256
AseI AT'TA_AT
Cuts at: 20 20
Size: 3476
AsiSI GCG_AT'CGC
Cuts at: 104 104
Size: 3476
AvaI C'yCGr_G
Cuts at: 496 496
Size: 3476
BamHI G'GATC_C
Cuts at: 501 501
Size: 3476
BanI G'GyrC_C
Cuts at: 379 386 492 906 1154 1189 379
Size: 7 106 414 248 35 2666
Fragments arranged by size:
2666 414 248 106 35 7
BanII G_rGCy'C
Cuts at: 490 1520 490
Size: 1030 2446
BbeI G_GCGC'C
Cuts at: 910 1158 910
Size: 248 3228
BciVI GTATCCnnnnn_n'
Cuts at: 1374 2135 3476 1374
Size: 761 1341 1374
Fragments arranged by size:
1374 1341 761
BclI T'GATC_A
Cuts at: 996 996
Size: 3476
BglII A'GATC_T
Cuts at: 991 3028 991
Size: 2037 1439
BlpI GC'TnA_GC
Cuts at: 588 588
Size: 3476
Bme1580I G_kGCm'C
Cuts at: 1101 1194 2250 1101
Size: 93 1056 2327
Fragments arranged by size:
2327 1056 93
BmrI ACTGGGnnnn_n'
Cuts at: 688 769 1104 3248 688
Size: 81 335 2144 916
Fragments arranged by size:
2144 916 335 81
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 1843 1843
Size: 3476
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 161 325 161
Size: 164 3312
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 652 1531 2023 2321 652
Size: 879 492 298 1807
Fragments arranged by size:
1807 879 492 298
BsaI GGTCTCn'nnnn_
Cuts at: 221 3180 221
Size: 2959 517
BsaAI yAC'GTr
Cuts at: 829 829
Size: 3476
BsaBI GATnn'nnATC
Cuts at: 6 990 3027 6
Size: 984 2037 455
Fragments arranged by size:
2037 984 455
BsaHI Gr'CG_yC
Cuts at: 907 1155 1857 3353 907
Size: 248 702 1496 1030
Fragments arranged by size:
1496 1030 702 248
BsaWI w'CCGG_w
Cuts at: 665 1186 1864 2138 2285 2696 665
Size: 521 678 274 147 411 1445
Fragments arranged by size:
1445 678 521 411 274 147
BseYI C'CCAG_C
Cuts at: 901 1659 2236 2732 901
Size: 758 577 496 1645
Fragments arranged by size:
1645 758 577 496
BsiEI CG_ry'CG
Cuts at: 104 1018 1064 2272 104
Size: 914 46 1208 1308
Fragments arranged by size:
1308 1208 914 46
BsiHKAI G_wGCw'C
Cuts at: 490 1268 1458 2250 490
Size: 778 190 792 1716
Fragments arranged by size:
1716 792 778 190
Bsp1286I G_dGCh'C
Cuts at: 490 1101 1194 1268 1458 1520 2250 490
Size: 611 93 74 190 62 730 1716
Fragments arranged by size:
1716 730 611 190 93 74 62
BspEI T'CCGG_A
Cuts at: 2696 2696
Size: 3476
BspHI T'CATG_A
Cuts at: 2652 2652
Size: 3476
BspMI ACCTGCnnnn'nnnn_
Cuts at: 526 740 1042 1423 526
Size: 214 302 381 2579
Fragments arranged by size:
2579 381 302 214
BsrBI CCG'CTC
Cuts at: 50 1768 1822 3306 3471 50
Size: 1718 54 1484 165 55
Fragments arranged by size:
1718 1484 165 55 54
BsrDI GCAATG_nn'
Cuts at: 1388 1388
Size: 3476
BsrFI r'CCGG_y
Cuts at: 1474 1655 1864 1474
Size: 181 209 3086
Fragments arranged by size:
3086 209 181
BssSI C'ACGA_G
Cuts at: 1747 2105 1747
Size: 358 3118
BstAPI GCAn_nnn'nTGC
Cuts at: 853 853
Size: 3476
BstBI TT'CG_AA
Cuts at: 1837 1837
Size: 3476
BstYI r'GATC_y
Cuts at: 1 416 501 968 991 1326 1572 2584 2670
Size: 415 85 467 23 335 246 1012 86
Cuts at: 2670 2682 3028 1
Size: 12 346 449
Fragments arranged by size:
1012 467 449 415 346 335 246 86
85 23 12
BtgI C'CryG_G
Cuts at: 107 107
Size: 3476
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 1426 1607 1770 1426
Size: 181 163 3132
Fragments arranged by size:
3132 181 163
BtsI GCAGTG_nn'
Cuts at: 719 719
Size: 3476
DraI TTT'AAA
Cuts at: 475 475
Size: 3476
DrdI GACnn_nn'nnGTC
Cuts at: 1182 2040 1182
Size: 858 2618
EaeI y'GGCC_r
Cuts at: 366 1061 1235 1626 1653 2998 366
Size: 695 174 391 27 1345 844
Fragments arranged by size:
1345 844 695 391 174 27
EagI C'GGCC_G
Cuts at: 1061 1061
Size: 3476
EarI CTCTTCn'nnn_
Cuts at: 1499 1709 1499
Size: 210 3266
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 1684 1994 2140 3286 1684
Size: 310 146 1146 1874
Fragments arranged by size:
1874 1146 310 146
EcoICRI GAG'CTC
Cuts at: 488 488
Size: 3476
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 161 325 1301 1733 2480 2748 161
Size: 164 976 432 747 268 889
Fragments arranged by size:
976 889 747 432 268 164
EcoO109I rG'GnC_Cy
Cuts at: 615 615
Size: 3476
EcoRI G'AATT_C
Cuts at: 480 480
Size: 3476
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 1495 1495
Size: 3476
FspI TGC'GCA
Cuts at: 1257 1257
Size: 3476
HaeII r_GCGC'y
Cuts at: 910 1158 2180 3159 910
Size: 248 1022 979 1227
Fragments arranged by size:
1227 1022 979 248
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 174 206 1318 1348 1350 1380 174
Size: 32 1112 30 2 30 2270
Fragments arranged by size:
2270 1112 32 30 30 2
HincII GTy'rAC
Cuts at: 515 515
Size: 3476
KasI G'GCGC_C
Cuts at: 906 1154 906
Size: 248 3228
KpnI G_GTAC'C
Cuts at: 390 496 390
Size: 106 3370
MluI A'CGCG_T
Cuts at: 2909 2909
Size: 3476
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 2147 2331 2147
Size: 184 3292
MscI TGG'CCA
Cuts at: 1237 1237
Size: 3476
MslI CAynn'nnrTG
Cuts at: 1465 1592 1465
Size: 127 3349
MspA1I CmG'CkG
Cuts at: 587 901 1261 2274 2519 587
Size: 314 360 1013 245 1544
Fragments arranged by size:
1544 1013 360 314 245
NaeI GCC'GGC
Cuts at: 1657 1657
Size: 3476
NarI GG'CG_CC
Cuts at: 907 1155 907
Size: 248 3228
NcoI C'CATG_G
Cuts at: 107 107
Size: 3476
NgoMIV G'CCGG_C
Cuts at: 1655 1655
Size: 3476
NspI r_CATG'y
Cuts at: 529 1029 1936 529
Size: 500 907 2069
Fragments arranged by size:
2069 907 500
PciI A'CATG_T
Cuts at: 1932 1932
Size: 3476
PmeI GTTT'AAAC
Cuts at: 475 475
Size: 3476
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2615 2647 2615
Size: 32 3444
PstI C_TGCA'G
Cuts at: 523 1208 523
Size: 685 2791
PvuI CG_AT'CG
Cuts at: 104 104
Size: 3476
PvuII CAG'CTG
Cuts at: 901 1261 901
Size: 360 3116
RsrII CG'GwC_CG
Cuts at: 1671 1671
Size: 3476
SacI G_AGCT'C
Cuts at: 490 490
Size: 3476
SalI G'TCGA_C
Cuts at: 513 513
Size: 3476
SapI GCTCTTCn'nnn_
Cuts at: 1499 1709 1499
Size: 210 3266
SbfI CC_TGCA'GG
Cuts at: 523 523
Size: 3476
ScaI AGT'ACT
Cuts at: 2993 2993
Size: 3476
SexAI A'CCwGG_T
Cuts at: 389 389
Size: 3476
SfcI C'TryA_G
Cuts at: 33 172 195 519 1204 2197 2388 33
Size: 139 23 324 685 993 191 1121
Fragments arranged by size:
1121 993 685 324 191 139 23
SfoI GGC'GCC
Cuts at: 908 1156 908
Size: 248 3228
SgfI GCG_AT'CGC
Cuts at: 104 104
Size: 3476
SmaI CCC'GGG
Cuts at: 498 498
Size: 3476
SmlI C'TyrA_G
Cuts at: 631 1546 2038 2300 631
Size: 915 492 262 1807
Fragments arranged by size:
1807 915 492 262
SpeI A'CTAG_T
Cuts at: 67 67
Size: 3476
SphI G_CATG'C
Cuts at: 529 1029 529
Size: 500 2976
StuI AGG'CCT
Cuts at: 146 146
Size: 3476
StyI C'CwwG_G
Cuts at: 107 610 964 107
Size: 503 354 2619
Fragments arranged by size:
2619 503 354
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 147 1059 1192 1651 1860 147
Size: 912 133 459 209 1763
Fragments arranged by size:
1763 912 459 209 133
TatI w'GTAC_w
Cuts at: 2991 2991
Size: 3476
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 242 274 2993 3025 242
Size: 32 2719 32 693
Fragments arranged by size:
2719 693 32 32
Tth111I GACn'n_nGTC
Cuts at: 1273 1273
Size: 3476
XbaI T'CTAG_A
Cuts at: 507 507
Size: 3476
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 971 971
Size: 3476
XmaI C'CCGG_G
Cuts at: 496 496
Size: 3476
Enzymes that do cut:
AccI Acc65I AclI AcuI AflIII AgeI AlwNI ApaLI
ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI
BciVI BclI BglII BlpI Bme1580I BmrI BplI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BseYI BsiEI
BsiHKAI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI
BssSI BstAPI BstBI BstYI BtgI BtgZI BtsI DraI
DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I
EcoRI FalI FspI HaeII Hin4I HincII KasI KpnI
MluI MmeI MscI MslI MspA1I NaeI NarI NcoI
NgoMIV NspI PciI PmeI PpiI PstI PvuI PvuII
RsrII SacI SalI SapI SbfI ScaI SexAI SfcI
SfoI SgfI SmaI SmlI SpeI SphI StuI StyI
TaqII TatI TstI Tth111I XbaI XcmI XmaI
Enzymes that do not cut:
AarI AatII AfeI AflII AhdI AleI AlfI AloI
ApaI AscI AvrII BaeI BbsI BbvCI BcgI BfrBI
BglI BmgBI BmtI Bpu10I BsaXI BseRI BsgI BsiWI
BsmI BsmBI BsrGI BssHII BstEII BstXI BstZ17I Bsu36I
ClaI CspCI DraIII EcoNI EcoRV FseI FspAI HindIII
HpaI MfeI NdeI NheI NotI NruI NsiI PacI
PasI PflMI PfoI PmlI PpuMI PshAI PsiI PspOMI
PspXI PsrI SacII SanDI SfiI SgrAI SnaBI SrfI
SspI SwaI XhoI XmnI ZraI