Result of FASTA (ccds) for
pF1KB0668
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0668, 1000 aa
1>>>pF1KB0668 1000 - 1000 aa - 1000 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.4282+/-0.00142; mu= -19.6693+/- 0.085
mean_var=542.9188+/-112.898, 0's: 0 Z-trim(113.4): 15 B-trim: 407 in 1/51
Lambda= 0.055044
statistics sampled from 14057 (14064) to 14057 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.432), width: 16
Scan time: 4.920
The best scores are: opt bits E(32554)
CCDS7618.1 SEC23IP gene_id:11196|Hs108|chr10 (1000) 6721 549.3 1.4e-155
CCDS34883.1 DDHD2 gene_id:23259|Hs108|chr8 ( 711) 1490 133.8 1.2e-30
>>CCDS7618.1 SEC23IP gene_id:11196|Hs108|chr10 (1000 aa)
initn: 6721 init1: 6721 opt: 6721 Z-score: 2906.7 bits: 549.3 E(32554): 1.4e-155
Smith-Waterman score: 6721; 99.9% identity (100.0% similar) in 1000 aa overlap (1-1000:1-1000)
10 20 30 40 50 60
pF1KB0 MAERKPNGGSGGASTSSSGTNLLFSSSATEFSFNVPFIPVTQASASPASLLLPGEDSTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MAERKPNGGSGGASTSSSGTNLLFSSSATEFSFNVPFIPVTQASASPASLLLPGEDSTDV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 GEEDSFLGQTSIHTSAPQTFSYFSQVSSSSDPFGNIGQSPLTTAATSVGQSGFPKPLTAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GEEDSFLGQTSIHTSAPQTFSYFSQVSSSSDPFGNIGQSPLTTAATSVGQSGFPKPLTAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 PFTTGSQDVSNAFSPSISKAQPGAPPSSLMGINSYLPSQPSSLPPSYFGNQPQGIPQPGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PFTTGSQDVSNAFSPSISKAQPGAPPSSLMGINSYLPSQPSSLPPSYFGNQPQGIPQPGY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 NPYRHTPGSSRANPYIAPPQLQQCQTPGPPAHPPPSGPPVQMYQMPPGSLPPVPSSVQSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NPYRHTPGSSRANPYIAPPQLQQCQTPGPPAHPPPSGPPVQMYQMPPGSLPPVPSSVQSP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 AQQQVPARPGAPSVQVPSPFLLQNQYEPVQPHWFYCKEVEYKQLWMPFSVFDSLNLEEIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AQQQVPARPGAPSVQVPSPFLLQNQYEPVQPHWFYCKEVEYKQLWMPFSVFDSLNLEEIY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 NSVQPDPESVVLGTDGGRYDVYLYDRIRKAAYWEEEPAEVRRCTWFYKGDTDSRFIPYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NSVQPDPESVVLGTDGGRYDVYLYDRIRKAAYWEEEPAEVRRCTWFYKGDTDSRFIPYTE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 EFSEKLEAEYKKAVTTNQWHRRLEFPSGETIVMHNPKVIVQFQPSSVPDEWGTTQDGQTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 EFSEKLEAEYKKAVTTNQWHRRLEFPSGETIVMHNPKVIVQFQPSSVPDEWGTTQDGQTR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 PRVVKRGIDDNLDEIPDGEMPQVDHLVFVVHGIGPVCDLRFRSIIECVDDFRVVSLKLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PRVVKRGIDDNLDEIPDGEMPQVDHLVFVVHGIGPVCDLRFRSIIECVDDFRVVSLKLLR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB0 THFKKSLDDGKVSRVEFLPVHWHSSLGGDATGVDRNIKKITLPSIGRFRHFTNETLLDIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 THFKKSLDDGKVSRVEFLPVHWHSSLGGDATGVDRNIKKITLPSIGRFRHFTNETLLDIL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB0 FYNSPTYCQTIVEKVGMEINHLHALFMSRNPDFKGGVSVAGHSLGSLILFDILSNQKDLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FYNSPTYCQTIVEKVGMEINHLHALFMSRNPDFKGGVSVAGHSLGSLILFDILSNQKDLN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB0 LSKCPGPLAVANGVVKQLHFQEKQMPEEPKLTLDESYDLVVENEEVLTLQETLEALSLSE
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS76 LSKCPGPLAVANGVVKQLHFQEKQMPEEPKLTLDESYDLVVENKEVLTLQETLEALSLSE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB0 YFSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIANFVEHKAAKLKKAASEKKAVAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 YFSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIANFVEHKAAKLKKAASEKKAVAAT
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB0 STKGQEQSAQKTKDMASLPSESNEPKRKLPVGACVSSVCVNYESFEVGAGQVSVAYNSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 STKGQEQSAQKTKDMASLPSESNEPKRKLPVGACVSSVCVNYESFEVGAGQVSVAYNSLD
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB0 FEPEIFFALGSPIAMFLTIRGVDRIDENYSLPTCKGFFNIYHPLDPVAYRLEPMIVPDLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FEPEIFFALGSPIAMFLTIRGVDRIDENYSLPTCKGFFNIYHPLDPVAYRLEPMIVPDLD
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB0 LKAVLIPHHKGRKRLHLELKESLSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LKAVLIPHHKGRKRLHLELKESLSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB0 ELEKVANQIKEEEEKQVVEAEKVVESPDFSKDEDYLGKVGMLNGGRRIDYVLQEKPIESF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ELEKVANQIKEEEEKQVVEAEKVVESPDFSKDEDYLGKVGMLNGGRRIDYVLQEKPIESF
910 920 930 940 950 960
970 980 990 1000
pF1KB0 NEYLFALQSHLCYWESEDTALLLLKEIYRTMNISPEQPQH
::::::::::::::::::::::::::::::::::::::::
CCDS76 NEYLFALQSHLCYWESEDTALLLLKEIYRTMNISPEQPQH
970 980 990 1000
>>CCDS34883.1 DDHD2 gene_id:23259|Hs108|chr8 (711 aa)
initn: 2151 init1: 864 opt: 1490 Z-score: 663.8 bits: 133.8 E(32554): 1.2e-30
Smith-Waterman score: 2553; 52.6% identity (74.5% similar) in 770 aa overlap (235-998:2-709)
210 220 230 240 250 260
pF1KB0 QTPGPPAHPPPSGPPVQMYQMPPGSLPPVPSSVQSPAQQQVPARPGAPSVQVPSPFLLQN
::::: .: . : .:: . : : : .
CCDS34 MSSVQSQQEQLSQSDP-SPSPNSCSSFELID
10 20 30
270 280 290 300 310
pF1KB0 Q-----YEPVQPHWFYCKEVEYKQLWMPFSVFDSLNLEEIYNSVQPDPESVVLGTDGGRY
. ::::.::::::: .. :. :.::. :: .::: :.: . .. :. ::::::
CCDS34 MDAGSLYEPVSPHWFYCKIIDSKETWIPFNSEDSQQLEEAYSSGK-GCNGRVVPTDGGRY
40 50 60 70 80
320 330 340 350 360 370
pF1KB0 DVYLYDRIRKAAYWEEEPAEVRRCTWFYKGDTDSRFIPYTEEFSEKLEAEYKKAVTTNQW
::.: .:.: :.::.: .:::::::::::: :....::.: ::. :: : ::: ..:
CCDS34 DVHLGERMRYAVYWDELASEVRRCTWFYKGDKDNKYVPYSESFSQVLEETYMLAVTLDEW
90 100 110 120 130 140
380 390 400 410 420 430
pF1KB0 HRRLEFPSGETIVMHNPKVIVQFQPSSVPDEWGTTQDGQTRPRVVKRGIDDNLDEIPDGE
...:: :. : :..::::..:..:: . :.::.: : :::.::::... .: ::
CCDS34 KKKLESPNREIIILHNPKLMVHYQPVAGSDDWGSTPTEQGRPRTVKRGVENISVDIHCGE
150 160 170 180 190 200
440 450 460 470 480 490
pF1KB0 MPQVDHLVFVVHGIGPVCDLRFRSIIECVDDFRVVSLKLLRTHFKKSLDDGKVSRVEFLP
:.::::::::::::.::::::::..::.::: :::.::.:::::. .. ...::::::
CCDS34 PLQIDHLVFVVHGIGPACDLRFRSIVQCVNDFRSVSLNLLQTHFKKAQENQQIGRVEFLP
210 220 230 240 250 260
500 510 520 530 540 550
pF1KB0 VHWHSSLGGDATGVDRNIKKITLPSIGRFRHFTNETLLDILFYNSPTYCQTIVEKVGMEI
:.::: : .:::: ....::::::.:.:::::.:.::..::::::::::::. :. :.
CCDS34 VNWHSPL--HSTGVDVDLQRITLPSINRLRHFTNDTILDVFFYNSPTYCQTIVDTVASEM
270 280 290 300 310 320
560 570 580 590 600 610
pF1KB0 NHLHALFMSRNPDFKGGVSVAGHSLGSLILFDILSNQKDLNLSKCPGPLAVANGVVKQLH
:....::..::::::::::.::::::::::::::.:::: . : . .
CCDS34 NRIYTLFLQRNPDFKGGVSIAGHSLGSLILFDILTNQKD------------SLGDIDS--
330 340 350 360 370
620 630 640 650 660 670
pF1KB0 FQEKQMPEEPKLTLDESYDLVVENEEVLTLQETLEALSLSEYFSTFEKEKIDMESLLMCT
:: .: ..:... .. ::.: :. :.:::.:. :::::.: :.: .::
CCDS34 --EK-----------DSLNIVMDQGDTPTLEEDLKKLQLSEFFDIFEKEKVDKEALALCT
380 390 400 410 420
680 690 700 710 720 730
pF1KB0 VDDLKEMGIPLGPRKKIANFVEHKAAKLKKAASEKKAVAATSTKGQEQSAQKTKDMASLP
::.:.:::::::::: :. : .: .. : .. : . . :..:
CCDS34 DRDLQEIGIPLGPRKKILNYF-----------STRK-----NSMGIKRPAPQPASGANIP
430 440 450 460
740 750 760 770 780 790
pF1KB0 SESNEPKRKLPVGACVSSVCVNYESFEVGAGQVSVAYNSLDFEPEIFFALGSPIAMFLTI
.::. : :: : . ..:: ::::: : : ..::::::.::::.::::.
CCDS34 KESEF---------CSSSNTRNGDYLDVGIGQVSVKYPRLIYKPEIFFAFGSPIGMFLTV
470 480 490 500 510
800 810 820 830 840 850
pF1KB0 RGVDRIDENYSLPTCKGFFNIYHPLDPVAYRLEPMIVPDLDLKAVLIPHHKGRKRLHLEL
::. ::: :: .::::::::::::.::::::.:::.:: .... .::::::::::.::::
CCDS34 RGLKRIDPNYRFPTCKGFFNIYHPFDPVAYRIEPMVVPGVEFEPMLIPHHKGRKRMHLEL
520 530 540 550 560 570
860 870 880 890 900 910
pF1KB0 KESLSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQEELEKVANQIKEEEEKQV-V
.:.:.::. :::.....::. ::.. :.:: . : .: :.. . . :: :
CCDS34 REGLTRMSMDLKNNLLGSLRMAWKS---FTRAPYPALQASETPEETEAEPESTSEKPSDV
580 590 600 610 620 630
920 930 940 950 960 970
pF1KB0 EAEKVVESPDFSKDEDYLGKVGMLNGGRRIDYVLQEKPIESFNEYLFALQSHLCYWESED
..: :. :.: .:::::::.::::::::::::::::::::::::::::::::
CCDS34 NTE---ETSVAVKEEVLPINVGMLNGGQRIDYVLQEKPIESFNEYLFALQSHLCYWESED
640 650 660 670 680
980 990 1000
pF1KB0 TALLLLKEIYRTMNISPEQPQH
:.::.:::::.:..: .::
CCDS34 TVLLVLKEIYQTQGIFLDQPLQ
690 700 710
1000 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 11:45:43 2016 done: Thu Nov 3 11:45:44 2016
Total Scan time: 4.920 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]