Result of FASTA (ccds) for
pF1KB0499
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0499, 754 aa
1>>>pF1KB0499 754 - 754 aa - 754 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8798+/-0.00111; mu= 7.4200+/- 0.066
mean_var=122.0023+/-23.956, 0's: 0 Z-trim(106.2): 49 B-trim: 0 in 0/50
Lambda= 0.116115
statistics sampled from 8820 (8829) to 8820 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.271), width: 16
Scan time: 3.360
The best scores are: opt bits E(32554)
CCDS6249.1 NBN gene_id:4683|Hs108|chr8 ( 754) 4934 838.4 0
CCDS43753.1 NBN gene_id:4683|Hs108|chr8 ( 672) 4402 749.2 4.7e-216
>>CCDS6249.1 NBN gene_id:4683|Hs108|chr8 (754 aa)
initn: 4934 init1: 4934 opt: 4934 Z-score: 4473.2 bits: 838.4 E(32554): 0
Smith-Waterman score: 4934; 99.9% identity (100.0% similar) in 754 aa overlap (1-754:1-754)
10 20 30 40 50 60
pF1KB0 MWKLLPAAGPAGGEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLSQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MWKLLPAAGPAGGEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLSQT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 DEIPVLTLKDNSKYGTFVNEEKMQNGFSRTLKSGDGITFGVFGSKFRIEYEPLVACSSCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DEIPVLTLKDNSKYGTFVNEEKMQNGFSRTLKSGDGITFGVFGSKFRIEYEPLVACSSCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 DVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 LKAVQSKKQPPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTFIFLNAKQHKKLSS
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LKAVESKKQPPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTFIFLNAKQHKKLSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 AVVFGGGEARLITEENEEEHNFFLAPGTCVVDTGITNSQTLIPDCQKKWIQSIMDMLQRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 AVVFGGGEARLITEENEEEHNFFLAPGTCVVDTGITNSQTLIPDCQKKWIQSIMDMLQRQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 GLRPIPEAEIGLAVIFMTTKNYCDPQGHPSTGLKTTTPGPSLSQGVSVDEKLMPSAPVNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GLRPIPEAEIGLAVIFMTTKNYCDPQGHPSTGLKTTTPGPSLSQGVSVDEKLMPSAPVNT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 TTYVADTESEQADTWDLSERPKEIKVSKMEQKFRMLSQDAPTVKESCKTSSNNNSMVSNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TTYVADTESEQADTWDLSERPKEIKVSKMEQKFRMLSQDAPTVKESCKTSSNNNSMVSNT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 LAKMRIPNYQLSPTKLPSINKSKDRASQQQQTNSIRNYFQPSTKKRERDEENQEMSSCKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LAKMRIPNYQLSPTKLPSINKSKDRASQQQQTNSIRNYFQPSTKKRERDEENQEMSSCKS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB0 ARIETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIVKNSASKSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 ARIETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIVKNSASKSH
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB0 AAEKLRSNKKREMDDVAIEDEVLEQLFKDTKPELEIDVKVQKQEEDVNVRKRPRMDIETN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 AAEKLRSNKKREMDDVAIEDEVLEQLFKDTKPELEIDVKVQKQEEDVNVRKRPRMDIETN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB0 DTFSDEAVPESSKISQENEIGKKRELKEDSLWSAKEISNNDKLQDDSEMLPKKLLLTEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DTFSDEAVPESSKISQENEIGKKRELKEDSLWSAKEISNNDKLQDDSEMLPKKLLLTEFR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB0 SLVIKNSTSRNPSGINDDYGQLKNFKKFKKVTYPGAGKLPHIIGGSDLIAHHARKNTELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SLVIKNSTSRNPSGINDDYGQLKNFKKFKKVTYPGAGKLPHIIGGSDLIAHHARKNTELE
670 680 690 700 710 720
730 740 750
pF1KB0 EWLRQEMEVQNQHAKEESLADDLFRYNPYLKRRR
::::::::::::::::::::::::::::::::::
CCDS62 EWLRQEMEVQNQHAKEESLADDLFRYNPYLKRRR
730 740 750
>>CCDS43753.1 NBN gene_id:4683|Hs108|chr8 (672 aa)
initn: 4402 init1: 4402 opt: 4402 Z-score: 3992.4 bits: 749.2 E(32554): 4.7e-216
Smith-Waterman score: 4402; 99.9% identity (100.0% similar) in 672 aa overlap (83-754:1-672)
60 70 80 90 100 110
pF1KB0 SVTNLSQTDEIPVLTLKDNSKYGTFVNEEKMQNGFSRTLKSGDGITFGVFGSKFRIEYEP
::::::::::::::::::::::::::::::
CCDS43 MQNGFSRTLKSGDGITFGVFGSKFRIEYEP
10 20 30
120 130 140 150 160 170
pF1KB0 LVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIV
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB0 KPEYFTEFLKAVQSKKQPPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTFIFLNA
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KPEYFTEFLKAVESKKQPPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTFIFLNA
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB0 KQHKKLSSAVVFGGGEARLITEENEEEHNFFLAPGTCVVDTGITNSQTLIPDCQKKWIQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KQHKKLSSAVVFGGGEARLITEENEEEHNFFLAPGTCVVDTGITNSQTLIPDCQKKWIQS
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB0 IMDMLQRQGLRPIPEAEIGLAVIFMTTKNYCDPQGHPSTGLKTTTPGPSLSQGVSVDEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IMDMLQRQGLRPIPEAEIGLAVIFMTTKNYCDPQGHPSTGLKTTTPGPSLSQGVSVDEKL
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB0 MPSAPVNTTTYVADTESEQADTWDLSERPKEIKVSKMEQKFRMLSQDAPTVKESCKTSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MPSAPVNTTTYVADTESEQADTWDLSERPKEIKVSKMEQKFRMLSQDAPTVKESCKTSSN
280 290 300 310 320 330
420 430 440 450 460 470
pF1KB0 NNSMVSNTLAKMRIPNYQLSPTKLPSINKSKDRASQQQQTNSIRNYFQPSTKKRERDEEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NNSMVSNTLAKMRIPNYQLSPTKLPSINKSKDRASQQQQTNSIRNYFQPSTKKRERDEEN
340 350 360 370 380 390
480 490 500 510 520 530
pF1KB0 QEMSSCKSARIETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QEMSSCKSARIETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIV
400 410 420 430 440 450
540 550 560 570 580 590
pF1KB0 KNSASKSHAAEKLRSNKKREMDDVAIEDEVLEQLFKDTKPELEIDVKVQKQEEDVNVRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KNSASKSHAAEKLRSNKKREMDDVAIEDEVLEQLFKDTKPELEIDVKVQKQEEDVNVRKR
460 470 480 490 500 510
600 610 620 630 640 650
pF1KB0 PRMDIETNDTFSDEAVPESSKISQENEIGKKRELKEDSLWSAKEISNNDKLQDDSEMLPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PRMDIETNDTFSDEAVPESSKISQENEIGKKRELKEDSLWSAKEISNNDKLQDDSEMLPK
520 530 540 550 560 570
660 670 680 690 700 710
pF1KB0 KLLLTEFRSLVIKNSTSRNPSGINDDYGQLKNFKKFKKVTYPGAGKLPHIIGGSDLIAHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KLLLTEFRSLVIKNSTSRNPSGINDDYGQLKNFKKFKKVTYPGAGKLPHIIGGSDLIAHH
580 590 600 610 620 630
720 730 740 750
pF1KB0 ARKNTELEEWLRQEMEVQNQHAKEESLADDLFRYNPYLKRRR
::::::::::::::::::::::::::::::::::::::::::
CCDS43 ARKNTELEEWLRQEMEVQNQHAKEESLADDLFRYNPYLKRRR
640 650 660 670
754 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:04:30 2016 done: Sat Nov 5 02:04:30 2016
Total Scan time: 3.360 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]