Result of FASTA (omim) for
pF1KB0498
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0498, 418 aa
1>>>pF1KB0498 418 - 418 aa - 418 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7618+/-0.000332; mu= 0.6621+/- 0.021
mean_var=156.7667+/-32.136, 0's: 0 Z-trim(120.0): 18 B-trim: 725 in 1/61
Lambda= 0.102435
statistics sampled from 34664 (34682) to 34664 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.407), width: 16
Scan time: 7.540
The best scores are: opt bits E(85289)
XP_016875258 (OMIM: 600392) PREDICTED: DNA repair ( 418) 2793 424.4 2.6e-118
XP_005253778 (OMIM: 600392) PREDICTED: DNA repair ( 418) 2793 424.4 2.6e-118
NP_602296 (OMIM: 600392) DNA repair protein RAD52 ( 418) 2793 424.4 2.6e-118
XP_011519293 (OMIM: 600392) PREDICTED: DNA repair ( 418) 2793 424.4 2.6e-118
XP_011519292 (OMIM: 600392) PREDICTED: DNA repair ( 418) 2793 424.4 2.6e-118
NP_001284348 (OMIM: 600392) DNA repair protein RAD ( 418) 2793 424.4 2.6e-118
XP_005253777 (OMIM: 600392) PREDICTED: DNA repair ( 418) 2793 424.4 2.6e-118
NP_001284350 (OMIM: 600392) DNA repair protein RAD ( 341) 2271 347.2 3.7e-95
XP_011519295 (OMIM: 600392) PREDICTED: DNA repair ( 340) 2136 327.3 3.7e-89
XP_011519297 (OMIM: 600392) PREDICTED: DNA repair ( 320) 2003 307.6 2.9e-83
XP_016875259 (OMIM: 600392) PREDICTED: DNA repair ( 384) 1913 294.3 3.4e-79
XP_016875260 (OMIM: 600392) PREDICTED: DNA repair ( 301) 1654 256.0 9.2e-68
NP_001284351 (OMIM: 600392) DNA repair protein RAD ( 301) 1654 256.0 9.2e-68
NP_001284349 (OMIM: 600392) DNA repair protein RAD ( 226) 1046 166.1 7.9e-41
>>XP_016875258 (OMIM: 600392) PREDICTED: DNA repair prot (418 aa)
initn: 2793 init1: 2793 opt: 2793 Z-score: 2245.0 bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
310 320 330 340 350 360
370 380 390 400 410
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
370 380 390 400 410
>>XP_005253778 (OMIM: 600392) PREDICTED: DNA repair prot (418 aa)
initn: 2793 init1: 2793 opt: 2793 Z-score: 2245.0 bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
310 320 330 340 350 360
370 380 390 400 410
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
370 380 390 400 410
>>NP_602296 (OMIM: 600392) DNA repair protein RAD52 homo (418 aa)
initn: 2793 init1: 2793 opt: 2793 Z-score: 2245.0 bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
310 320 330 340 350 360
370 380 390 400 410
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
370 380 390 400 410
>>XP_011519293 (OMIM: 600392) PREDICTED: DNA repair prot (418 aa)
initn: 2793 init1: 2793 opt: 2793 Z-score: 2245.0 bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
310 320 330 340 350 360
370 380 390 400 410
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
370 380 390 400 410
>>XP_011519292 (OMIM: 600392) PREDICTED: DNA repair prot (418 aa)
initn: 2793 init1: 2793 opt: 2793 Z-score: 2245.0 bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
310 320 330 340 350 360
370 380 390 400 410
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
370 380 390 400 410
>>NP_001284348 (OMIM: 600392) DNA repair protein RAD52 h (418 aa)
initn: 2793 init1: 2793 opt: 2793 Z-score: 2245.0 bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
310 320 330 340 350 360
370 380 390 400 410
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
370 380 390 400 410
>>XP_005253777 (OMIM: 600392) PREDICTED: DNA repair prot (418 aa)
initn: 2793 init1: 2793 opt: 2793 Z-score: 2245.0 bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
310 320 330 340 350 360
370 380 390 400 410
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
370 380 390 400 410
>>NP_001284350 (OMIM: 600392) DNA repair protein RAD52 h (341 aa)
initn: 2271 init1: 2271 opt: 2271 Z-score: 1829.5 bits: 347.2 E(85289): 3.7e-95
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 341 aa overlap (78-418:1-341)
50 60 70 80 90 100
pF1KB0 GPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGV
::::::::::::::::::::::::::::::
NP_001 MFGYNGWAHSITQQNVDFVDLNNGKFYVGV
10 20 30
110 120 130 140 150 160
pF1KB0 CAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCIL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB0 DKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSR
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB0 PSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKS
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB0 EAAPPAPPVTHSTPVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAAPPAPPVTHSTPVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSS
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB0 RADPAQTSDTLALNNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RADPAQTSDTLALNNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKS
280 290 300 310 320 330
410
pF1KB0 QDMKKRKYDPS
:::::::::::
NP_001 QDMKKRKYDPS
340
>>XP_011519295 (OMIM: 600392) PREDICTED: DNA repair prot (340 aa)
initn: 2133 init1: 2133 opt: 2136 Z-score: 1721.7 bits: 327.3 E(85289): 3.7e-89
Smith-Waterman score: 2136; 99.4% identity (99.4% similar) in 327 aa overlap (1-326:1-327)
10 20 30 40 50 60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
250 260 270 280 290 300
310 320 330 340 350
pF1KB0 PVTVSEPLLEKDFLAGVTQELI-KTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLA
:::::::::::::::::::::: : ::
XP_011 PVTVSEPLLEKDFLAGVTQELISKYLEMLRLLKTTLKSGL
310 320 330 340
>>XP_011519297 (OMIM: 600392) PREDICTED: DNA repair prot (320 aa)
initn: 2003 init1: 2003 opt: 2003 Z-score: 1615.9 bits: 307.6 E(85289): 2.9e-83
Smith-Waterman score: 2003; 98.7% identity (99.3% similar) in 307 aa overlap (112-418:14-320)
90 100 110 120 130 140
pF1KB0 NGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEK
: .. :::::::::::::::::::::::::
XP_011 MRCLVTMAGHTPSRSRMWDGSYHEDVGYGVSEGLKSKALSLEK
10 20 30 40
150 160 170 180 190 200
pF1KB0 ARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVE
50 60 70 80 90 100
210 220 230 240 250 260
pF1KB0 EARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQ
110 120 130 140 150 160
270 280 290 300 310 320
pF1KB0 KQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTVSEPLLEKDFLAGVTQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTVSEPLLEKDFLAGVTQEL
170 180 190 200 210 220
330 340 350 360 370 380
pF1KB0 IKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLALNNQMVTQNRTPHSVCHQKPQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLALNNQMVTQNRTPHSVCHQKPQA
230 240 250 260 270 280
390 400 410
pF1KB0 KSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
:::::::::::::::::::::::::::::::::::::
XP_011 KSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
290 300 310 320
418 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:10:26 2016 done: Sat Nov 5 02:10:27 2016
Total Scan time: 7.540 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]