FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0498, 418 aa
  1>>>pF1KB0498 418 - 418 aa - 418 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9654+/-0.000778; mu= 5.2545+/- 0.047
 mean_var=133.5576+/-27.090, 0's: 0 Z-trim(112.5): 10  B-trim: 159 in 1/53
 Lambda= 0.110979
 statistics sampled from 13230 (13234) to 13230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.407), width:  16
 Scan time:  3.420

The best scores are:                                      opt bits E(32554)
CCDS8507.2 RAD52 gene_id:5893|Hs108|chr12          ( 418) 2793 458.2 6.7e-129
CCDS76500.1 RAD52 gene_id:5893|Hs108|chr12         ( 301) 1654 275.8   4e-74
CCDS76501.1 RAD52 gene_id:5893|Hs108|chr12         ( 226) 1046 178.4 6.2e-45


>>CCDS8507.2 RAD52 gene_id:5893|Hs108|chr12               (418 aa)
 initn: 2793 init1: 2793 opt: 2793  Z-score: 2427.6  bits: 458.2 E(32554): 6.7e-129
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
              370       380       390       400       410        

>>CCDS76500.1 RAD52 gene_id:5893|Hs108|chr12              (301 aa)
 initn: 1637 init1: 1637 opt: 1654  Z-score: 1444.3  bits: 275.8 E(32554): 4e-74
Smith-Waterman score: 1654; 86.3% identity (91.5% similar) in 293 aa overlap (1-293:1-288)

               10        20        30        40        50        60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
       :::   .   .   ..: : ::    .. .: :. .. . .:.   . :.: :       
CCDS76 SRS--RGCCSGARPRRRPLMQK---PELIRRGERGHAPAEAPAEAAAAAVPGADGEAAGS
                250       260          270       280       290     

              310       320       330       340       350       360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
                                                                   
CCDS76 SLHAVS                                                      
         300                                                       

>>CCDS76501.1 RAD52 gene_id:5893|Hs108|chr12              (226 aa)
 initn: 1046 init1: 1046 opt: 1046  Z-score: 920.2  bits: 178.4 E(32554): 6.2e-45
Smith-Waterman score: 1046; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)

               10        20        30        40        50        60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
       ::::::::::::::::::::::::::::::::::::                        
CCDS76 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRLPLLGVSGRILYSLFSVHSVMCAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
                                                                   
CCDS76 GLPTPTASAQTAPSSPCSSAVLRYAQEFWECTWKLYSGQRLPEITK              
              190       200       210       220                    




418 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:10:25 2016 done: Sat Nov  5 02:10:25 2016
 Total Scan time:  3.420 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]