Result of FASTA (omim) for
pF1KB0471
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0471, 515 aa
1>>>pF1KB0471 515 - 515 aa - 515 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6513+/-0.000365; mu= 12.0260+/- 0.023
mean_var=102.8953+/-20.076, 0's: 0 Z-trim(115.9): 20 B-trim: 34 in 1/51
Lambda= 0.126438
statistics sampled from 26613 (26633) to 26613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.312), width: 16
Scan time: 10.110
The best scores are: opt bits E(85289)
NP_997468 (OMIM: 602376,610424,616669) interferon ( 515) 3437 637.7 2.4e-182
NP_001276054 (OMIM: 602376,610424,616669) interfer ( 515) 3437 637.7 2.4e-182
NP_997467 (OMIM: 602376,610424,616669) interferon ( 331) 1833 345.0 2e-94
NP_000865 (OMIM: 602376,610424,616669) interferon ( 331) 1833 345.0 2e-94
NP_001276055 (OMIM: 602376,610424,616669) interfer ( 239) 1572 297.3 3.3e-80
NP_001276057 (OMIM: 602376,610424,616669) interfer ( 239) 1572 297.3 3.3e-80
>>NP_997468 (OMIM: 602376,610424,616669) interferon alph (515 aa)
initn: 3437 init1: 3437 opt: 3437 Z-score: 3394.6 bits: 637.7 E(85289): 2.4e-182
Smith-Waterman score: 3437; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)
10 20 30 40 50 60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 DPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRKSPLQDPFPEEDYSSTEGSGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 DPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRKSPLQDPFPEEDYSSTEGSGGR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 ITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDPEDPDNVQSNHLLASGEGTQPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 ITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDPEDPDNVQSNHLLASGEGTQPT
430 440 450 460 470 480
490 500 510
pF1KB0 FPSPSSEGLWSEDAPSDQSDTSESDVDLGDGYIMR
:::::::::::::::::::::::::::::::::::
NP_997 FPSPSSEGLWSEDAPSDQSDTSESDVDLGDGYIMR
490 500 510
>>NP_001276054 (OMIM: 602376,610424,616669) interferon a (515 aa)
initn: 3437 init1: 3437 opt: 3437 Z-score: 3394.6 bits: 637.7 E(85289): 2.4e-182
Smith-Waterman score: 3437; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)
10 20 30 40 50 60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 DPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRKSPLQDPFPEEDYSSTEGSGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRKSPLQDPFPEEDYSSTEGSGGR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 ITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDPEDPDNVQSNHLLASGEGTQPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDPEDPDNVQSNHLLASGEGTQPT
430 440 450 460 470 480
490 500 510
pF1KB0 FPSPSSEGLWSEDAPSDQSDTSESDVDLGDGYIMR
:::::::::::::::::::::::::::::::::::
NP_001 FPSPSSEGLWSEDAPSDQSDTSESDVDLGDGYIMR
490 500 510
>>NP_997467 (OMIM: 602376,610424,616669) interferon alph (331 aa)
initn: 1855 init1: 1833 opt: 1833 Z-score: 1816.2 bits: 345.0 E(85289): 2e-94
Smith-Waterman score: 1833; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
::::::::::::::::::::::::::::::::::::::::
NP_997 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLRQGLAKGWNAVAIHRCSHNA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
NP_997 LQSETPELKQSSCLSFPSSWDYKRASLCPSD
310 320 330
>>NP_000865 (OMIM: 602376,610424,616669) interferon alph (331 aa)
initn: 1855 init1: 1833 opt: 1833 Z-score: 1816.2 bits: 345.0 E(85289): 2e-94
Smith-Waterman score: 1833; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
::::::::::::::::::::::::::::::::::::::::
NP_000 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLRQGLAKGWNAVAIHRCSHNA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
NP_000 LQSETPELKQSSCLSFPSSWDYKRASLCPSD
310 320 330
>>NP_001276055 (OMIM: 602376,610424,616669) interferon a (239 aa)
initn: 1572 init1: 1572 opt: 1572 Z-score: 1561.0 bits: 297.3 E(85289): 3.3e-80
Smith-Waterman score: 1572; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESEFS
190 200 210 220 230
250 260 270 280 290 300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
>>NP_001276057 (OMIM: 602376,610424,616669) interferon a (239 aa)
initn: 1572 init1: 1572 opt: 1572 Z-score: 1561.0 bits: 297.3 E(85289): 3.3e-80
Smith-Waterman score: 1572; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESEFS
190 200 210 220 230
250 260 270 280 290 300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
515 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:51:12 2016 done: Sat Nov 5 18:51:13 2016
Total Scan time: 10.110 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]