FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0471, 515 aa
  1>>>pF1KB0471 515 - 515 aa - 515 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8258+/-0.000895; mu= 11.1700+/- 0.054
 mean_var=102.7352+/-20.082, 0's: 0 Z-trim(108.8): 18  B-trim: 0 in 0/51
 Lambda= 0.126536
 statistics sampled from 10412 (10423) to 10412 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.32), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS13621.1 IFNAR2 gene_id:3455|Hs108|chr21        ( 515) 3437 638.1  7e-183
CCDS13622.1 IFNAR2 gene_id:3455|Hs108|chr21        ( 331) 1833 345.2 6.7e-95
CCDS74782.1 IFNAR2 gene_id:3455|Hs108|chr21        ( 239) 1572 297.5 1.1e-80


>>CCDS13621.1 IFNAR2 gene_id:3455|Hs108|chr21             (515 aa)
 initn: 3437 init1: 3437 opt: 3437  Z-score: 3396.7  bits: 638.1 E(32554): 7e-183
Smith-Waterman score: 3437; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)

               10        20        30        40        50        60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 DPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRKSPLQDPFPEEDYSSTEGSGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRKSPLQDPFPEEDYSSTEGSGGR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 ITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDPEDPDNVQSNHLLASGEGTQPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDPEDPDNVQSNHLLASGEGTQPT
              430       440       450       460       470       480

              490       500       510     
pF1KB0 FPSPSSEGLWSEDAPSDQSDTSESDVDLGDGYIMR
       :::::::::::::::::::::::::::::::::::
CCDS13 FPSPSSEGLWSEDAPSDQSDTSESDVDLGDGYIMR
              490       500       510     

>>CCDS13622.1 IFNAR2 gene_id:3455|Hs108|chr21             (331 aa)
 initn: 1855 init1: 1833 opt: 1833  Z-score: 1817.2  bits: 345.2 E(32554): 6.7e-95
Smith-Waterman score: 1833; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
       ::::::::::::::::::::::::::::::::::::::::                    
CCDS13 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLRQGLAKGWNAVAIHRCSHNA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
                                                                   
CCDS13 LQSETPELKQSSCLSFPSSWDYKRASLCPSD                             
              310       320       330                              

>>CCDS74782.1 IFNAR2 gene_id:3455|Hs108|chr21             (239 aa)
 initn: 1572 init1: 1572 opt: 1572  Z-score: 1561.9  bits: 297.5 E(32554): 1.1e-80
Smith-Waterman score: 1572; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS74 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESEFS 
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD




515 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:51:11 2016 done: Sat Nov  5 18:51:12 2016
 Total Scan time:  3.390 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]