Result of FASTA (omim) for
pF1KB0469
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0469, 515 aa
1>>>pF1KB0469 515 - 515 aa - 515 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.7591+/-0.00047; mu= -4.3346+/- 0.029
mean_var=384.5035+/-79.835, 0's: 0 Z-trim(121.5): 12 B-trim: 689 in 1/54
Lambda= 0.065407
statistics sampled from 38087 (38099) to 38087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.447), width: 16
Scan time: 9.600
The best scores are: opt bits E(85289)
NP_003067 (OMIM: 601735) SWI/SNF-related matrix-as ( 515) 3483 342.7 1.5e-93
NP_620710 (OMIM: 601735) SWI/SNF-related matrix-as ( 474) 2857 283.6 8.6e-76
NP_001003802 (OMIM: 601737) SWI/SNF-related matrix ( 470) 2363 237.0 9.2e-62
NP_003069 (OMIM: 601737) SWI/SNF-related matrix-as ( 470) 2363 237.0 9.2e-62
NP_001003801 (OMIM: 601737) SWI/SNF-related matrix ( 483) 2356 236.4 1.5e-61
NP_001091896 (OMIM: 601736) SWI/SNF-related matrix ( 531) 2164 218.3 4.5e-56
XP_011514823 (OMIM: 601737) PREDICTED: SWI/SNF-rel ( 381) 2127 214.7 4e-55
NP_001317369 (OMIM: 601736) SWI/SNF-related matrix ( 483) 2110 213.2 1.4e-54
NP_001317368 (OMIM: 601736) SWI/SNF-related matrix ( 456) 2078 210.1 1.1e-53
XP_005269164 (OMIM: 601735) PREDICTED: SWI/SNF-rel ( 474) 2029 205.5 2.8e-52
XP_011536997 (OMIM: 601735) PREDICTED: SWI/SNF-rel ( 265) 1734 177.4 4.5e-44
XP_016868045 (OMIM: 601737) PREDICTED: SWI/SNF-rel ( 318) 1612 166.0 1.5e-40
>>NP_003067 (OMIM: 601735) SWI/SNF-related matrix-associ (515 aa)
initn: 3483 init1: 3483 opt: 3483 Z-score: 1800.5 bits: 342.7 E(85289): 1.5e-93
Smith-Waterman score: 3483; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)
10 20 30 40 50 60
pF1KB0 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
430 440 450 460 470 480
490 500 510
pF1KB0 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
:::::::::::::::::::::::::::::::::::
NP_003 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
490 500 510
>>NP_620710 (OMIM: 601735) SWI/SNF-related matrix-associ (474 aa)
initn: 2940 init1: 2857 opt: 2857 Z-score: 1481.7 bits: 283.6 E(85289): 8.6e-76
Smith-Waterman score: 3110; 92.0% identity (92.0% similar) in 515 aa overlap (1-515:1-474)
10 20 30 40 50 60
pF1KB0 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
::: ::::::::::::::::
NP_620 DNK-----------------------------------------TMTDVVGNPEEERRAE
430
490 500 510
pF1KB0 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
:::::::::::::::::::::::::::::::::::
NP_620 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
440 450 460 470
>>NP_001003802 (OMIM: 601737) SWI/SNF-related matrix-ass (470 aa)
initn: 1822 init1: 1619 opt: 2363 Z-score: 1229.8 bits: 237.0 E(85289): 9.2e-62
Smith-Waterman score: 2363; 74.1% identity (88.0% similar) in 475 aa overlap (54-515:3-470)
30 40 50 60 70
pF1KB0 AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-----RPGMLPGSRMTPQGPSMGP
:: .: :::: :.:: :: :::
NP_001 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGP
10 20 30
80 90 100 110 120 130
pF1KB0 PG--YGGNPSVRPGLAQSGMDQSRKR--PAPQQIQ-QVQQQAVQN---RNHNAKKKKMAD
:: : :.:.:::::: .::. .::: : : : : : : : : . :...::..::::
NP_001 PGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB0 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF
:::::::::::::::::::::::::::::::::::.:::::::::.:::::::..:::::
NP_001 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB0 NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYG
:::: ::::..:..:::::::::.::.: .:::::::::::::::::::::::
NP_001 NPAKPDAEDSDGSIASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKDLYG
160 170 180 190 200
260 270 280 290 300 310
pF1KB0 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ
::::::::::: :::::::::::::::..::::.::::::::::::::::::::::.:::
NP_001 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ
210 220 230 240 250 260
320 330 340 350 360 370
pF1KB0 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP
.: .:.::::::.::..::: :..:.. :::.::::. :.::::::::: :::.::.:
NP_001 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP
270 280 290 300 310 320
380 390 400 410 420 430
pF1KB0 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIET
:.:::::::::.::::::::::::::.. :: ::.:::::::.::::..::.:::::::.
NP_001 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES
330 340 350 360 370 380
440 450 460 470 480 490
pF1KB0 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEA
::::: ::.:::::.:::.:...: :.:: ::::.::::.:::::::::::: :::.:::
NP_001 INQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEA
390 400 410 420 430 440
500 510
pF1KB0 VCRYFYSKVQQRRQELEQALGIRNT
: :::: :.:::::::::.: .:::
NP_001 VSRYFYCKIQQRRQELEQSLVVRNT
450 460 470
>>NP_003069 (OMIM: 601737) SWI/SNF-related matrix-associ (470 aa)
initn: 1822 init1: 1619 opt: 2363 Z-score: 1229.8 bits: 237.0 E(85289): 9.2e-62
Smith-Waterman score: 2363; 74.1% identity (88.0% similar) in 475 aa overlap (54-515:3-470)
30 40 50 60 70
pF1KB0 AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-----RPGMLPGSRMTPQGPSMGP
:: .: :::: :.:: :: :::
NP_003 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGP
10 20 30
80 90 100 110 120 130
pF1KB0 PG--YGGNPSVRPGLAQSGMDQSRKR--PAPQQIQ-QVQQQAVQN---RNHNAKKKKMAD
:: : :.:.:::::: .::. .::: : : : : : : : : . :...::..::::
NP_003 PGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB0 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF
:::::::::::::::::::::::::::::::::::.:::::::::.:::::::..:::::
NP_003 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB0 NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYG
:::: ::::..:..:::::::::.::.: .:::::::::::::::::::::::
NP_003 NPAKPDAEDSDGSIASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKDLYG
160 170 180 190 200
260 270 280 290 300 310
pF1KB0 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ
::::::::::: :::::::::::::::..::::.::::::::::::::::::::::.:::
NP_003 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ
210 220 230 240 250 260
320 330 340 350 360 370
pF1KB0 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP
.: .:.::::::.::..::: :..:.. :::.::::. :.::::::::: :::.::.:
NP_003 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP
270 280 290 300 310 320
380 390 400 410 420 430
pF1KB0 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIET
:.:::::::::.::::::::::::::.. :: ::.:::::::.::::..::.:::::::.
NP_003 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES
330 340 350 360 370 380
440 450 460 470 480 490
pF1KB0 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEA
::::: ::.:::::.:::.:...: :.:: ::::.::::.:::::::::::: :::.:::
NP_003 INQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEA
390 400 410 420 430 440
500 510
pF1KB0 VCRYFYSKVQQRRQELEQALGIRNT
: :::: :.:::::::::.: .:::
NP_003 VSRYFYCKIQQRRQELEQSLVVRNT
450 460 470
>>NP_001003801 (OMIM: 601737) SWI/SNF-related matrix-ass (483 aa)
initn: 1816 init1: 1619 opt: 2356 Z-score: 1226.1 bits: 236.4 E(85289): 1.5e-61
Smith-Waterman score: 2356; 75.2% identity (89.2% similar) in 464 aa overlap (60-515:27-483)
30 40 50 60 70 80
pF1KB0 PGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPG--YGGNPSV
:::: :.:: :: ::::: : :.:.:
NP_001 MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAV
10 20 30 40 50
90 100 110 120 130 140
pF1KB0 RPGLAQSGMDQSRKR--PAPQQIQ-QVQQQAVQN---RNHNAKKKKMADKILPQRIRELV
::::: .::. .::: : : : : : : : : . :...::..:::::::::::::::
NP_001 RPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELV
60 70 80 90 100 110
150 160 170 180 190 200
pF1KB0 PESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGE
::::::::::::::::::::::::.:::::::::.:::::::..::::::::: ::::..
NP_001 PESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSD
120 130 140 150 160 170
210 220 230 240 250 260
pF1KB0 GTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT
:..:::::::::.::.: .::::::::::::::::::::::::::::::::::
NP_001 GSIASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT
180 190 200 210 220
270 280 290 300 310 320
pF1KB0 ATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQ
:::::::::::::::..::::.::::::::::::::::::::::.:::.: .:.:::::
NP_001 PTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQ
230 240 250 260 270 280
330 340 350 360 370 380
pF1KB0 YIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDP
:.::..::: :..:.. :::.::::. :.::::::::: :::.::.::.:::::::::
NP_001 YVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDP
290 300 310 320 330 340
390 400 410 420 430 440
pF1KB0 NDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFM
.::::::::::::::.. :: ::.:::::::.::::..::.:::::::.::::: ::.::
NP_001 SDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFM
350 360 370 380 390 400
450 460 470 480 490 500
pF1KB0 LSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQ
:::.:::.:...: :.:: ::::.::::.:::::::::::: :::.:::: :::: :.::
NP_001 LSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQ
410 420 430 440 450 460
510
pF1KB0 RRQELEQALGIRNT
:::::::.: .:::
NP_001 RRQELEQSLVVRNT
470 480
>>NP_001091896 (OMIM: 601736) SWI/SNF-related matrix-ass (531 aa)
initn: 2159 init1: 1539 opt: 2164 Z-score: 1127.7 bits: 218.3 E(85289): 4.5e-56
Smith-Waterman score: 2208; 63.6% identity (80.1% similar) in 544 aa overlap (1-515:1-531)
10 20 30 40 50
pF1KB0 MAARA--GFQ--SVAPSGGAGASGGAGAAAALGPGGTPGPPVRM-GPA-----PGQGLYR
:..:. :: ..:.::: :.. .. ::: ::: .: ::: :: . .:
NP_001 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
10 20 30 40 50 60
60 70 80 90 100
pF1KB0 SPM----PGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRP
:: :.: : :::: ::.:: : ..:::. .:. .:::. . :: :::
NP_001 -PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKR-
70 80 90 100 110
110 120 130 140 150 160
pF1KB0 APQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMR
. :.: .: .. :..:::::.::::::::::::::::::::::::::::: :
NP_001 --LLVPQAQPPMPAQR-RGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIAR
120 130 140 150 160 170
170 180 190 200 210
pF1KB0 KRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRV
::..::::.:.:. :::::::.:::::.:.:... :. :: ::::::::
NP_001 KRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRV
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB0 EGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQ
::.::. : .:::::::::::::::::::.::::::::::::: :::::::::
NP_001 EGKLLD-------DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQ
240 250 260 270 280
280 290 300 310 320 330
pF1KB0 VKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP
::::::.::.::.:::::.::::.:::::::::::.::::: .:.:::: ::: ..:::
NP_001 VKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDG
290 300 310 320 330 340
340 350 360 370 380 390
pF1KB0 HEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYD
::::.. :..:..::: :..:::::..: .::. :.::.:::::::::::::::::::
NP_001 HEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYD
350 360 370 380 390 400
400 410 420 430 440 450
pF1KB0 IDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGF
::::::: ::.::..:: ::..:::::.:: :::::::.::::::::.:::::. ::: :
NP_001 IDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDF
410 420 430 440 450 460
460 470 480 490 500 510
pF1KB0 INDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALG
:..::.:: :::: .:::.::::::::: :: :::::::: :....:::::::::::.::
NP_001 IQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLG
470 480 490 500 510 520
pF1KB0 IRNT
:: :
NP_001 IRLT
530
>>XP_011514823 (OMIM: 601737) PREDICTED: SWI/SNF-related (381 aa)
initn: 1619 init1: 1619 opt: 2127 Z-score: 1110.6 bits: 214.7 E(85289): 4e-55
Smith-Waterman score: 2127; 79.6% identity (93.3% similar) in 388 aa overlap (128-515:1-381)
100 110 120 130 140 150
pF1KB0 QSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKL
::::::::::::::::::::::::::::::
XP_011 MADKILPQRIRELVPESQAYMDLLAFERKL
10 20 30
160 170 180 190 200 210
pF1KB0 DQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLE
::::::::.:::::::::.:::::::..::::::::: ::::..:..:::::::::.::.
XP_011 DQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLD
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB0 DSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGD
: .:::::::::::::::::::::::::::::::::: :::::::::::::::
XP_011 -------DPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGD
100 110 120 130 140
280 290 300 310 320 330
pF1KB0 VNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFV
..::::.::::::::::::::::::::::.:::.: .:.::::::.::..::: :..:..
XP_011 LSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYI
150 160 170 180 190 200
340 350 360 370 380 390
pF1KB0 ICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVD
:::.::::. :.::::::::: :::.::.::.:::::::::.::::::::::::::.
XP_011 NGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVE
210 220 230 240 250 260
400 410 420 430 440 450
pF1KB0 DTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQ
. :: ::.:::::::.::::..::.:::::::.::::: ::.:::::.:::.:...: :.
XP_011 EPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLR
270 280 290 300 310 320
460 470 480 490 500 510
pF1KB0 SQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
:: ::::.::::.:::::::::::: :::.:::: :::: :.:::::::::.: .:::
XP_011 SQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
330 340 350 360 370 380
>>NP_001317369 (OMIM: 601736) SWI/SNF-related matrix-ass (483 aa)
initn: 2141 init1: 1539 opt: 2110 Z-score: 1100.6 bits: 213.2 E(85289): 1.4e-54
Smith-Waterman score: 2110; 67.4% identity (83.4% similar) in 476 aa overlap (55-515:20-483)
30 40 50 60 70 80
pF1KB0 AAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPG---Y
:: :::: ::.:: : ..:::. .
NP_001 MGRRVGVEVTPRWAPQKCQGARPQRPGMSPGNRMPMAGLQVGPPAGSPF
10 20 30 40
90 100 110 120 130 140
pF1KB0 GGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELV
:. .:::. . :: ::: . :.: .: .. :..:::::.:::::::::
NP_001 GAAAPLRPGMPPTMMDPFRKR---LLVPQAQPPMPAQR-RGLKRRKMADKVLPQRIRELV
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB0 PESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGE
:::::::::::::::::::: :::..::::.:.:. :::::::.:::::.:.:... :.
NP_001 PESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSA
110 120 130 140 150 160
210 220 230 240
pF1KB0 GT------------VASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLY
:: ::::::::::.::.: .:::::::::::::::::::.::
NP_001 GTAGTPGGTPAGDKVASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKELY
170 180 190 200 210
250 260 270 280 290 300
pF1KB0 GPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHT
::::::::::: :::::::::::::::.::.::.:::::.::::.:::::::::::.::
NP_001 GPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHT
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB0 QTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPE
::: .:.:::: ::: ..::: ::::.. :..:..::: :..:::::..: .::. :.
NP_001 QTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPD
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB0 PIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIE
::.:::::::::::::::::::::::::: ::.::..:: ::..:::::.:: :::::::
NP_001 PIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIE
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB0 TINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQE
.::::::::.:::::. ::: ::..::.:: :::: .:::.::::::::: :: ::::::
NP_001 SINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQE
400 410 420 430 440 450
490 500 510
pF1KB0 AVCRYFYSKVQQRRQELEQALGIRNT
:: :....:::::::::::.:::: :
NP_001 AVGRHIFAKVQQRRQELEQVLGIRLT
460 470 480
>>NP_001317368 (OMIM: 601736) SWI/SNF-related matrix-ass (456 aa)
initn: 2109 init1: 1539 opt: 2078 Z-score: 1084.6 bits: 210.1 E(85289): 1.1e-53
Smith-Waterman score: 2078; 67.5% identity (83.8% similar) in 468 aa overlap (63-515:1-456)
40 50 60 70 80
pF1KB0 TPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRP
: ::.:: : ..:::. .:. .::
NP_001 MSPGNRMPMAGLQVGPPAGSPFGAAAPLRP
10 20 30
90 100 110 120 130 140
pF1KB0 GLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMD
:. . :: ::: . :.: .: .. :..:::::.:::::::::::::::::
NP_001 GMPPTMMDPFRKR---LLVPQAQPPMPAQR-RGLKRRKMADKVLPQRIRELVPESQAYMD
40 50 60 70 80
150 160 170 180 190 200
pF1KB0 LLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------
:::::::::::: :::..::::.:.:. :::::::.:::::.:.:... :. ::
NP_001 LLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGG
90 100 110 120 130 140
210 220 230 240 250
pF1KB0 ------VASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVE
::::::::::.::. : .:::::::::::::::::::.::::::::::
NP_001 TPAGDKVASWELRVEGKLLD-------DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVE
150 160 170 180 190
260 270 280 290 300 310
pF1KB0 WHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQ
::: :::::::::::::::.::.::.:::::.::::.:::::::::::.::::: .:.:
NP_001 WHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQ
200 210 220 230 240 250
320 330 340 350 360 370
pF1KB0 ALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVI
::: ::: ..::: ::::.. :..:..::: :..:::::..: .::. :.::.:::::
NP_001 ALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVI
260 270 280 290 300 310
380 390 400 410 420 430
pF1KB0 SVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQ
::::::::::::::::::::: ::.::..:: ::..:::::.:: :::::::.:::::::
NP_001 SVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQ
320 330 340 350 360 370
440 450 460 470 480 490
pF1KB0 REFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYS
:.:::::. ::: ::..::.:: :::: .:::.::::::::: :: :::::::: :....
NP_001 RDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFA
380 390 400 410 420 430
500 510
pF1KB0 KVQQRRQELEQALGIRNT
:::::::::::.:::: :
NP_001 KVQQRRQELEQVLGIRLT
440 450
>>XP_005269164 (OMIM: 601735) PREDICTED: SWI/SNF-related (474 aa)
initn: 3203 init1: 2001 opt: 2029 Z-score: 1059.4 bits: 205.5 E(85289): 2.8e-52
Smith-Waterman score: 3125; 92.0% identity (92.0% similar) in 515 aa overlap (1-515:1-474)
10 20 30 40 50 60
pF1KB0 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIK---
130 140 150 160 170
190 200 210 220 230 240
pF1KB0 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
::::::::::::::::::::::
XP_005 --------------------------------------SALSKYDATKQKRKFSSFFKSL
180 190
250 260 270 280 290 300
pF1KB0 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB0 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB0 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB0 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
380 390 400 410 420 430
490 500 510
pF1KB0 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
:::::::::::::::::::::::::::::::::::
XP_005 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
440 450 460 470
515 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:01:36 2016 done: Sat Nov 5 17:01:37 2016
Total Scan time: 9.600 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]