Result of FASTA (ccds) for
pF1KB0469
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0469, 515 aa
1>>>pF1KB0469 515 - 515 aa - 515 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.2334+/-0.0011; mu= -1.0450+/- 0.066
mean_var=348.7429+/-72.026, 0's: 0 Z-trim(114.2): 15 B-trim: 141 in 1/52
Lambda= 0.068679
statistics sampled from 14762 (14771) to 14762 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.454), width: 16
Scan time: 3.680
The best scores are: opt bits E(32554)
CCDS8797.2 SMARCD1 gene_id:6602|Hs108|chr12 ( 515) 3483 358.9 8.1e-99
CCDS8798.2 SMARCD1 gene_id:6602|Hs108|chr12 ( 474) 2857 296.8 3.6e-80
CCDS5924.1 SMARCD3 gene_id:6604|Hs108|chr7 ( 470) 2363 247.9 1.9e-65
CCDS34780.1 SMARCD3 gene_id:6604|Hs108|chr7 ( 483) 2356 247.2 3.2e-65
CCDS45756.1 SMARCD2 gene_id:6603|Hs108|chr17 ( 531) 2164 228.2 1.8e-59
CCDS82188.1 SMARCD2 gene_id:6603|Hs108|chr17 ( 483) 2110 222.8 6.9e-58
CCDS82187.1 SMARCD2 gene_id:6603|Hs108|chr17 ( 456) 2078 219.6 6e-57
>>CCDS8797.2 SMARCD1 gene_id:6602|Hs108|chr12 (515 aa)
initn: 3483 init1: 3483 opt: 3483 Z-score: 1887.6 bits: 358.9 E(32554): 8.1e-99
Smith-Waterman score: 3483; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)
10 20 30 40 50 60
pF1KB0 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
430 440 450 460 470 480
490 500 510
pF1KB0 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
:::::::::::::::::::::::::::::::::::
CCDS87 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
490 500 510
>>CCDS8798.2 SMARCD1 gene_id:6602|Hs108|chr12 (474 aa)
initn: 2940 init1: 2857 opt: 2857 Z-score: 1552.8 bits: 296.8 E(32554): 3.6e-80
Smith-Waterman score: 3110; 92.0% identity (92.0% similar) in 515 aa overlap (1-515:1-474)
10 20 30 40 50 60
pF1KB0 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
::: ::::::::::::::::
CCDS87 DNK-----------------------------------------TMTDVVGNPEEERRAE
430
490 500 510
pF1KB0 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
:::::::::::::::::::::::::::::::::::
CCDS87 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
440 450 460 470
>>CCDS5924.1 SMARCD3 gene_id:6604|Hs108|chr7 (470 aa)
initn: 1822 init1: 1619 opt: 2363 Z-score: 1288.4 bits: 247.9 E(32554): 1.9e-65
Smith-Waterman score: 2363; 74.1% identity (88.0% similar) in 475 aa overlap (54-515:3-470)
30 40 50 60 70
pF1KB0 AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-----RPGMLPGSRMTPQGPSMGP
:: .: :::: :.:: :: :::
CCDS59 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGP
10 20 30
80 90 100 110 120 130
pF1KB0 PG--YGGNPSVRPGLAQSGMDQSRKR--PAPQQIQ-QVQQQAVQN---RNHNAKKKKMAD
:: : :.:.:::::: .::. .::: : : : : : : : : . :...::..::::
CCDS59 PGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB0 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF
:::::::::::::::::::::::::::::::::::.:::::::::.:::::::..:::::
CCDS59 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB0 NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYG
:::: ::::..:..:::::::::.::.: .:::::::::::::::::::::::
CCDS59 NPAKPDAEDSDGSIASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKDLYG
160 170 180 190 200
260 270 280 290 300 310
pF1KB0 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ
::::::::::: :::::::::::::::..::::.::::::::::::::::::::::.:::
CCDS59 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ
210 220 230 240 250 260
320 330 340 350 360 370
pF1KB0 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP
.: .:.::::::.::..::: :..:.. :::.::::. :.::::::::: :::.::.:
CCDS59 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP
270 280 290 300 310 320
380 390 400 410 420 430
pF1KB0 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIET
:.:::::::::.::::::::::::::.. :: ::.:::::::.::::..::.:::::::.
CCDS59 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES
330 340 350 360 370 380
440 450 460 470 480 490
pF1KB0 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEA
::::: ::.:::::.:::.:...: :.:: ::::.::::.:::::::::::: :::.:::
CCDS59 INQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEA
390 400 410 420 430 440
500 510
pF1KB0 VCRYFYSKVQQRRQELEQALGIRNT
: :::: :.:::::::::.: .:::
CCDS59 VSRYFYCKIQQRRQELEQSLVVRNT
450 460 470
>>CCDS34780.1 SMARCD3 gene_id:6604|Hs108|chr7 (483 aa)
initn: 1816 init1: 1619 opt: 2356 Z-score: 1284.5 bits: 247.2 E(32554): 3.2e-65
Smith-Waterman score: 2356; 75.2% identity (89.2% similar) in 464 aa overlap (60-515:27-483)
30 40 50 60 70 80
pF1KB0 PGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPG--YGGNPSV
:::: :.:: :: ::::: : :.:.:
CCDS34 MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAV
10 20 30 40 50
90 100 110 120 130 140
pF1KB0 RPGLAQSGMDQSRKR--PAPQQIQ-QVQQQAVQN---RNHNAKKKKMADKILPQRIRELV
::::: .::. .::: : : : : : : : : . :...::..:::::::::::::::
CCDS34 RPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELV
60 70 80 90 100 110
150 160 170 180 190 200
pF1KB0 PESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGE
::::::::::::::::::::::::.:::::::::.:::::::..::::::::: ::::..
CCDS34 PESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSD
120 130 140 150 160 170
210 220 230 240 250 260
pF1KB0 GTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT
:..:::::::::.::.: .::::::::::::::::::::::::::::::::::
CCDS34 GSIASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT
180 190 200 210 220
270 280 290 300 310 320
pF1KB0 ATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQ
:::::::::::::::..::::.::::::::::::::::::::::.:::.: .:.:::::
CCDS34 PTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQ
230 240 250 260 270 280
330 340 350 360 370 380
pF1KB0 YIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDP
:.::..::: :..:.. :::.::::. :.::::::::: :::.::.::.:::::::::
CCDS34 YVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDP
290 300 310 320 330 340
390 400 410 420 430 440
pF1KB0 NDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFM
.::::::::::::::.. :: ::.:::::::.::::..::.:::::::.::::: ::.::
CCDS34 SDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFM
350 360 370 380 390 400
450 460 470 480 490 500
pF1KB0 LSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQ
:::.:::.:...: :.:: ::::.::::.:::::::::::: :::.:::: :::: :.::
CCDS34 LSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQ
410 420 430 440 450 460
510
pF1KB0 RRQELEQALGIRNT
:::::::.: .:::
CCDS34 RRQELEQSLVVRNT
470 480
>>CCDS45756.1 SMARCD2 gene_id:6603|Hs108|chr17 (531 aa)
initn: 2159 init1: 1539 opt: 2164 Z-score: 1181.1 bits: 228.2 E(32554): 1.8e-59
Smith-Waterman score: 2208; 63.6% identity (80.1% similar) in 544 aa overlap (1-515:1-531)
10 20 30 40 50
pF1KB0 MAARA--GFQ--SVAPSGGAGASGGAGAAAALGPGGTPGPPVRM-GPA-----PGQGLYR
:..:. :: ..:.::: :.. .. ::: ::: .: ::: :: . .:
CCDS45 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
10 20 30 40 50 60
60 70 80 90 100
pF1KB0 SPM----PGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRP
:: :.: : :::: ::.:: : ..:::. .:. .:::. . :: :::
CCDS45 -PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKR-
70 80 90 100 110
110 120 130 140 150 160
pF1KB0 APQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMR
. :.: .: .. :..:::::.::::::::::::::::::::::::::::: :
CCDS45 --LLVPQAQPPMPAQR-RGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIAR
120 130 140 150 160 170
170 180 190 200 210
pF1KB0 KRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRV
::..::::.:.:. :::::::.:::::.:.:... :. :: ::::::::
CCDS45 KRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRV
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB0 EGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQ
::.::. : .:::::::::::::::::::.::::::::::::: :::::::::
CCDS45 EGKLLD-------DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQ
240 250 260 270 280
280 290 300 310 320 330
pF1KB0 VKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP
::::::.::.::.:::::.::::.:::::::::::.::::: .:.:::: ::: ..:::
CCDS45 VKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDG
290 300 310 320 330 340
340 350 360 370 380 390
pF1KB0 HEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYD
::::.. :..:..::: :..:::::..: .::. :.::.:::::::::::::::::::
CCDS45 HEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYD
350 360 370 380 390 400
400 410 420 430 440 450
pF1KB0 IDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGF
::::::: ::.::..:: ::..:::::.:: :::::::.::::::::.:::::. ::: :
CCDS45 IDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDF
410 420 430 440 450 460
460 470 480 490 500 510
pF1KB0 INDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALG
:..::.:: :::: .:::.::::::::: :: :::::::: :....:::::::::::.::
CCDS45 IQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLG
470 480 490 500 510 520
pF1KB0 IRNT
:: :
CCDS45 IRLT
530
>>CCDS82188.1 SMARCD2 gene_id:6603|Hs108|chr17 (483 aa)
initn: 2141 init1: 1539 opt: 2110 Z-score: 1152.7 bits: 222.8 E(32554): 6.9e-58
Smith-Waterman score: 2110; 67.4% identity (83.4% similar) in 476 aa overlap (55-515:20-483)
30 40 50 60 70 80
pF1KB0 AAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPG---Y
:: :::: ::.:: : ..:::. .
CCDS82 MGRRVGVEVTPRWAPQKCQGARPQRPGMSPGNRMPMAGLQVGPPAGSPF
10 20 30 40
90 100 110 120 130 140
pF1KB0 GGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELV
:. .:::. . :: ::: . :.: .: .. :..:::::.:::::::::
CCDS82 GAAAPLRPGMPPTMMDPFRKR---LLVPQAQPPMPAQR-RGLKRRKMADKVLPQRIRELV
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB0 PESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGE
:::::::::::::::::::: :::..::::.:.:. :::::::.:::::.:.:... :.
CCDS82 PESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSA
110 120 130 140 150 160
210 220 230 240
pF1KB0 GT------------VASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLY
:: ::::::::::.::.: .:::::::::::::::::::.::
CCDS82 GTAGTPGGTPAGDKVASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKELY
170 180 190 200 210
250 260 270 280 290 300
pF1KB0 GPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHT
::::::::::: :::::::::::::::.::.::.:::::.::::.:::::::::::.::
CCDS82 GPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHT
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB0 QTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPE
::: .:.:::: ::: ..::: ::::.. :..:..::: :..:::::..: .::. :.
CCDS82 QTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPD
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB0 PIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIE
::.:::::::::::::::::::::::::: ::.::..:: ::..:::::.:: :::::::
CCDS82 PIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIE
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB0 TINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQE
.::::::::.:::::. ::: ::..::.:: :::: .:::.::::::::: :: ::::::
CCDS82 SINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQE
400 410 420 430 440 450
490 500 510
pF1KB0 AVCRYFYSKVQQRRQELEQALGIRNT
:: :....:::::::::::.:::: :
CCDS82 AVGRHIFAKVQQRRQELEQVLGIRLT
460 470 480
>>CCDS82187.1 SMARCD2 gene_id:6603|Hs108|chr17 (456 aa)
initn: 2109 init1: 1539 opt: 2078 Z-score: 1135.9 bits: 219.6 E(32554): 6e-57
Smith-Waterman score: 2078; 67.5% identity (83.8% similar) in 468 aa overlap (63-515:1-456)
40 50 60 70 80
pF1KB0 TPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRP
: ::.:: : ..:::. .:. .::
CCDS82 MSPGNRMPMAGLQVGPPAGSPFGAAAPLRP
10 20 30
90 100 110 120 130 140
pF1KB0 GLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMD
:. . :: ::: . :.: .: .. :..:::::.:::::::::::::::::
CCDS82 GMPPTMMDPFRKR---LLVPQAQPPMPAQR-RGLKRRKMADKVLPQRIRELVPESQAYMD
40 50 60 70 80
150 160 170 180 190 200
pF1KB0 LLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------
:::::::::::: :::..::::.:.:. :::::::.:::::.:.:... :. ::
CCDS82 LLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGG
90 100 110 120 130 140
210 220 230 240 250
pF1KB0 ------VASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVE
::::::::::.::. : .:::::::::::::::::::.::::::::::
CCDS82 TPAGDKVASWELRVEGKLLD-------DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVE
150 160 170 180 190
260 270 280 290 300 310
pF1KB0 WHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQ
::: :::::::::::::::.::.::.:::::.::::.:::::::::::.::::: .:.:
CCDS82 WHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQ
200 210 220 230 240 250
320 330 340 350 360 370
pF1KB0 ALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVI
::: ::: ..::: ::::.. :..:..::: :..:::::..: .::. :.::.:::::
CCDS82 ALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVI
260 270 280 290 300 310
380 390 400 410 420 430
pF1KB0 SVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQ
::::::::::::::::::::: ::.::..:: ::..:::::.:: :::::::.:::::::
CCDS82 SVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQ
320 330 340 350 360 370
440 450 460 470 480 490
pF1KB0 REFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYS
:.:::::. ::: ::..::.:: :::: .:::.::::::::: :: :::::::: :....
CCDS82 RDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFA
380 390 400 410 420 430
500 510
pF1KB0 KVQQRRQELEQALGIRNT
:::::::::::.:::: :
CCDS82 KVQQRRQELEQVLGIRLT
440 450
515 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:01:35 2016 done: Sat Nov 5 17:01:35 2016
Total Scan time: 3.680 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]