Result of FASTA (omim) for
pF1KB0435
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0435, 448 aa
1>>>pF1KB0435 448 - 448 aa - 448 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7380+/-0.000331; mu= 16.7891+/- 0.021
mean_var=103.5487+/-20.748, 0's: 0 Z-trim(118.6): 58 B-trim: 964 in 1/54
Lambda= 0.126038
statistics sampled from 31650 (31722) to 31650 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.372), width: 16
Scan time: 6.240
The best scores are: opt bits E(85289)
NP_071731 (OMIM: 129490,224900,604095,612630) tumo ( 448) 3055 566.0 7.3e-161
XP_011508805 (OMIM: 129490,224900,604095,612630) P ( 496) 3055 566.0 7.9e-161
XP_006712267 (OMIM: 129490,224900,604095,612630) P ( 480) 1559 294.0 5.9e-79
XP_011508804 (OMIM: 129490,224900,604095,612630) P ( 528) 1559 294.0 6.3e-79
XP_016876141 (OMIM: 606122) PREDICTED: tumor necro ( 328) 262 58.0 4.4e-08
XP_005266503 (OMIM: 606122) PREDICTED: tumor necro ( 328) 262 58.0 4.4e-08
NP_001191387 (OMIM: 606122) tumor necrosis factor ( 417) 262 58.1 5.3e-08
NP_683760 (OMIM: 606122) tumor necrosis factor rec ( 417) 262 58.1 5.3e-08
XP_005266502 (OMIM: 606122) PREDICTED: tumor necro ( 423) 262 58.1 5.3e-08
XP_016876140 (OMIM: 606122) PREDICTED: tumor necro ( 423) 262 58.1 5.3e-08
XP_011533448 (OMIM: 606122) PREDICTED: tumor necro ( 423) 262 58.1 5.3e-08
NP_061117 (OMIM: 606122) tumor necrosis factor rec ( 423) 262 58.1 5.3e-08
XP_011529309 (OMIM: 300276) PREDICTED: tumor necro ( 144) 250 55.5 1.1e-07
XP_011529308 (OMIM: 300276) PREDICTED: tumor necro ( 170) 250 55.5 1.3e-07
XP_011529306 (OMIM: 300276) PREDICTED: tumor necro ( 191) 250 55.6 1.4e-07
XP_016885195 (OMIM: 300276) PREDICTED: tumor necro ( 198) 250 55.6 1.4e-07
XP_016885193 (OMIM: 300276) PREDICTED: tumor necro ( 231) 250 55.6 1.6e-07
XP_011529304 (OMIM: 300276) PREDICTED: tumor necro ( 252) 250 55.7 1.7e-07
XP_011529303 (OMIM: 300276) PREDICTED: tumor necro ( 318) 250 55.8 2e-07
XP_011529302 (OMIM: 300276) PREDICTED: tumor necro ( 318) 250 55.8 2e-07
NP_001186616 (OMIM: 300276) tumor necrosis factor ( 297) 249 55.6 2.1e-07
NP_068555 (OMIM: 300276) tumor necrosis factor rec ( 297) 249 55.6 2.1e-07
NP_001311135 (OMIM: 300276) tumor necrosis factor ( 299) 249 55.6 2.1e-07
NP_001229239 (OMIM: 300276) tumor necrosis factor ( 318) 249 55.6 2.2e-07
NP_689408 (OMIM: 611211) tumor necrosis factor rec ( 430) 226 51.5 5.1e-06
NP_116260 (OMIM: 611211) tumor necrosis factor rec ( 430) 226 51.5 5.1e-06
XP_011529305 (OMIM: 300276) PREDICTED: tumor necro ( 238) 213 48.9 1.7e-05
>>NP_071731 (OMIM: 129490,224900,604095,612630) tumor ne (448 aa)
initn: 3055 init1: 3055 opt: 3055 Z-score: 3009.0 bits: 566.0 E(85289): 7.3e-161
Smith-Waterman score: 3055; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KB0 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 GYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPCLPGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 GYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPCLPGY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 YMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTLSPFQHAHKELSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 YMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTLSPFQHAHKELSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 QGHLATALIIAMSTIFIMAIAIVLIIMFYILKTKPSAPACCTSHPGKSVEAQVSKDEEKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 QGHLATALIIAMSTIFIMAIAIVLIIMFYILKTKPSAPACCTSHPGKSVEAQVSKDEEKK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 EAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEPAPDKQGSPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 EAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEPAPDKQGSPEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 CLLSLVHLAREKSATSNKSAGIQSRRKKILDVYANVCGVVEGLSPTELPFDCLEKTSRML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 CLLSLVHLAREKSATSNKSAGIQSRRKKILDVYANVCGVVEGLSPTELPFDCLEKTSRML
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 SSTYNSEKAVVKTWRHLAESFGLKRDEIGGMTDGMQLFDRISTAGYSIPELLTKLVQIER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 SSTYNSEKAVVKTWRHLAESFGLKRDEIGGMTDGMQLFDRISTAGYSIPELLTKLVQIER
370 380 390 400 410 420
430 440
pF1KB0 LDAVESLCADILEWAGVVPPASQPHAAS
::::::::::::::::::::::::::::
NP_071 LDAVESLCADILEWAGVVPPASQPHAAS
430 440
>>XP_011508805 (OMIM: 129490,224900,604095,612630) PREDI (496 aa)
initn: 3055 init1: 3055 opt: 3055 Z-score: 3008.4 bits: 566.0 E(85289): 7.9e-161
Smith-Waterman score: 3055; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:49-496)
10 20 30
pF1KB0 MAHVGDCTQTPWLPVLVVSLMCSARAEYSN
::::::::::::::::::::::::::::::
XP_011 GKVPSSPTAAVTQMRRKEAYRHPKVSPWERMAHVGDCTQTPWLPVLVVSLMCSARAEYSN
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB0 CGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQICRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQICRRH
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB0 KDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTKECVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTKECVG
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB0 ATSGASANFPGTSGSSTLSPFQHAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMFYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATSGASANFPGTSGSSTLSPFQHAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMFYI
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB0 LKTKPSAPACCTSHPGKSVEAQVSKDEEKKEAPDNVVMFSEKDEFEKLTATPAKPTKSEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKTKPSAPACCTSHPGKSVEAQVSKDEEKKEAPDNVVMFSEKDEFEKLTATPAKPTKSEN
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB0 DASSENEQLLSRSVDSDEEPAPDKQGSPELCLLSLVHLAREKSATSNKSAGIQSRRKKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DASSENEQLLSRSVDSDEEPAPDKQGSPELCLLSLVHLAREKSATSNKSAGIQSRRKKIL
320 330 340 350 360 370
340 350 360 370 380 390
pF1KB0 DVYANVCGVVEGLSPTELPFDCLEKTSRMLSSTYNSEKAVVKTWRHLAESFGLKRDEIGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVYANVCGVVEGLSPTELPFDCLEKTSRMLSSTYNSEKAVVKTWRHLAESFGLKRDEIGG
380 390 400 410 420 430
400 410 420 430 440
pF1KB0 MTDGMQLFDRISTAGYSIPELLTKLVQIERLDAVESLCADILEWAGVVPPASQPHAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTDGMQLFDRISTAGYSIPELLTKLVQIERLDAVESLCADILEWAGVVPPASQPHAAS
440 450 460 470 480 490
>>XP_006712267 (OMIM: 129490,224900,604095,612630) PREDI (480 aa)
initn: 1559 init1: 1559 opt: 1559 Z-score: 1538.5 bits: 294.0 E(85289): 5.9e-79
Smith-Waterman score: 2981; 93.3% identity (93.3% similar) in 480 aa overlap (1-448:1-480)
10 20 30 40 50 60
pF1KB0 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 GYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPCLPGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPCLPGY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 YMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTLSPFQHAHKELSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTLSPFQHAHKELSG
130 140 150 160 170 180
190 200 210
pF1KB0 QGHLATALIIAMSTIFIMAIAIVLIIMFYILKTKPSAP----------------------
::::::::::::::::::::::::::::::::::::::
XP_006 QGHLATALIIAMSTIFIMAIAIVLIIMFYILKTKPSAPGDGPHAPVPCFLDSPSTPPVGE
190 200 210 220 230 240
220 230 240 250 260
pF1KB0 ----------ACCTSHPGKSVEAQVSKDEEKKEAPDNVVMFSEKDEFEKLTATPAKPTKS
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PGCSLPPLSPACCTSHPGKSVEAQVSKDEEKKEAPDNVVMFSEKDEFEKLTATPAKPTKS
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB0 ENDASSENEQLLSRSVDSDEEPAPDKQGSPELCLLSLVHLAREKSATSNKSAGIQSRRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ENDASSENEQLLSRSVDSDEEPAPDKQGSPELCLLSLVHLAREKSATSNKSAGIQSRRKK
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB0 ILDVYANVCGVVEGLSPTELPFDCLEKTSRMLSSTYNSEKAVVKTWRHLAESFGLKRDEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ILDVYANVCGVVEGLSPTELPFDCLEKTSRMLSSTYNSEKAVVKTWRHLAESFGLKRDEI
370 380 390 400 410 420
390 400 410 420 430 440
pF1KB0 GGMTDGMQLFDRISTAGYSIPELLTKLVQIERLDAVESLCADILEWAGVVPPASQPHAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GGMTDGMQLFDRISTAGYSIPELLTKLVQIERLDAVESLCADILEWAGVVPPASQPHAAS
430 440 450 460 470 480
>>XP_011508804 (OMIM: 129490,224900,604095,612630) PREDI (528 aa)
initn: 1559 init1: 1559 opt: 1559 Z-score: 1537.9 bits: 294.0 E(85289): 6.3e-79
Smith-Waterman score: 2981; 93.3% identity (93.3% similar) in 480 aa overlap (1-448:49-528)
10 20 30
pF1KB0 MAHVGDCTQTPWLPVLVVSLMCSARAEYSN
::::::::::::::::::::::::::::::
XP_011 GKVPSSPTAAVTQMRRKEAYRHPKVSPWERMAHVGDCTQTPWLPVLVVSLMCSARAEYSN
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB0 CGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQICRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQICRRH
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB0 KDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTKECVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTKECVG
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB0 ATSGASANFPGTSGSSTLSPFQHAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMFYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATSGASANFPGTSGSSTLSPFQHAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMFYI
200 210 220 230 240 250
220 230
pF1KB0 LKTKPSAP--------------------------------ACCTSHPGKSVEAQVSKDEE
:::::::: ::::::::::::::::::::
XP_011 LKTKPSAPGDGPHAPVPCFLDSPSTPPVGEPGCSLPPLSPACCTSHPGKSVEAQVSKDEE
260 270 280 290 300 310
240 250 260 270 280 290
pF1KB0 KKEAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEPAPDKQGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKEAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEPAPDKQGSP
320 330 340 350 360 370
300 310 320 330 340 350
pF1KB0 ELCLLSLVHLAREKSATSNKSAGIQSRRKKILDVYANVCGVVEGLSPTELPFDCLEKTSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELCLLSLVHLAREKSATSNKSAGIQSRRKKILDVYANVCGVVEGLSPTELPFDCLEKTSR
380 390 400 410 420 430
360 370 380 390 400 410
pF1KB0 MLSSTYNSEKAVVKTWRHLAESFGLKRDEIGGMTDGMQLFDRISTAGYSIPELLTKLVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLSSTYNSEKAVVKTWRHLAESFGLKRDEIGGMTDGMQLFDRISTAGYSIPELLTKLVQI
440 450 460 470 480 490
420 430 440
pF1KB0 ERLDAVESLCADILEWAGVVPPASQPHAAS
::::::::::::::::::::::::::::::
XP_011 ERLDAVESLCADILEWAGVVPPASQPHAAS
500 510 520
>>XP_016876141 (OMIM: 606122) PREDICTED: tumor necrosis (328 aa)
initn: 201 init1: 103 opt: 262 Z-score: 266.0 bits: 58.0 E(85289): 4.4e-08
Smith-Waterman score: 267; 28.9% identity (55.5% similar) in 211 aa overlap (13-216:16-203)
10 20 30 40 50
pF1KB0 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPY
: ::. : :.. : ..: ..:. ... : : : :::: :
XP_016 MALKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRS-GNCVPCNQCGPGMELS
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 LSCGYGTKDEDYGCVPCPAEKFSKG-GYQICRRHKDC---EGFFRATVLTPGDMENDAEC
::.: :: :: : ..:.. :.: :. :: . : .:. . .:: :
XP_016 KECGFGY-GEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANC----SATSDAIC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 GPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTK-ECVGATSGASANFPGTSGSSTLSPFQ
: ::::.: ... .. : : : :: . .:.. .. .. .:.. :: .
XP_016 GDCLPGFYR-KTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKI------ASTASSPRD
120 130 140 150 160
180 190 200 210 220 230
pF1KB0 HAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMF--YILKTKPSAPACCTSHPGKSVE
: ::... :..:. ..:. :. .:. ... :::
XP_016 TA---------LAAVICSALATV-LLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSE
170 180 190 200 210
240 250 260 270 280 290
pF1KB0 AQVSKDEEKKEAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEP
XP_016 LSCFDRPQLHEYAHRACCQCRRDSVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASL
220 230 240 250 260 270
>>XP_005266503 (OMIM: 606122) PREDICTED: tumor necrosis (328 aa)
initn: 201 init1: 103 opt: 262 Z-score: 266.0 bits: 58.0 E(85289): 4.4e-08
Smith-Waterman score: 267; 28.9% identity (55.5% similar) in 211 aa overlap (13-216:16-203)
10 20 30 40 50
pF1KB0 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPY
: ::. : :.. : ..: ..:. ... : : : :::: :
XP_005 MALKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRS-GNCVPCNQCGPGMELS
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 LSCGYGTKDEDYGCVPCPAEKFSKG-GYQICRRHKDC---EGFFRATVLTPGDMENDAEC
::.: :: :: : ..:.. :.: :. :: . : .:. . .:: :
XP_005 KECGFGY-GEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANC----SATSDAIC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 GPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTK-ECVGATSGASANFPGTSGSSTLSPFQ
: ::::.: ... .. : : : :: . .:.. .. .. .:.. :: .
XP_005 GDCLPGFYR-KTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKI------ASTASSPRD
120 130 140 150 160
180 190 200 210 220 230
pF1KB0 HAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMF--YILKTKPSAPACCTSHPGKSVE
: ::... :..:. ..:. :. .:. ... :::
XP_005 TA---------LAAVICSALATV-LLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSE
170 180 190 200 210
240 250 260 270 280 290
pF1KB0 AQVSKDEEKKEAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEP
XP_005 LSCFDRPQLHEYAHRACCQCRRDSVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASL
220 230 240 250 260 270
>>NP_001191387 (OMIM: 606122) tumor necrosis factor rece (417 aa)
initn: 201 init1: 103 opt: 262 Z-score: 264.7 bits: 58.1 E(85289): 5.3e-08
Smith-Waterman score: 267; 28.9% identity (55.5% similar) in 211 aa overlap (13-216:16-203)
10 20 30 40 50
pF1KB0 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPY
: ::. : :.. : ..: ..:. ... : : : :::: :
NP_001 MALKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRS-GNCVPCNQCGPGMELS
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 LSCGYGTKDEDYGCVPCPAEKFSKG-GYQICRRHKDC---EGFFRATVLTPGDMENDAEC
::.: :: :: : ..:.. :.: :. :: . : .:. . .:: :
NP_001 KECGFGY-GEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANC----SATSDAIC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 GPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTK-ECVGATSGASANFPGTSGSSTLSPFQ
: ::::.: ... .. : : : :: . .:.. .. .. .:.. :: .
NP_001 GDCLPGFYR-KTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKI------ASTASSPRD
120 130 140 150 160
180 190 200 210 220 230
pF1KB0 HAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMF--YILKTKPSAPACCTSHPGKSVE
: ::... :..:. ..:. :. .:. ... :::
NP_001 TA---------LAAVICSALATV-LLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSE
170 180 190 200 210
240 250 260 270 280 290
pF1KB0 AQVSKDEEKKEAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEP
NP_001 LSCFDRPQLHEYAHRACCQCRRDSVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASL
220 230 240 250 260 270
>>NP_683760 (OMIM: 606122) tumor necrosis factor recepto (417 aa)
initn: 201 init1: 103 opt: 262 Z-score: 264.7 bits: 58.1 E(85289): 5.3e-08
Smith-Waterman score: 267; 28.9% identity (55.5% similar) in 211 aa overlap (13-216:16-203)
10 20 30 40 50
pF1KB0 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPY
: ::. : :.. : ..: ..:. ... : : : :::: :
NP_683 MALKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRS-GNCVPCNQCGPGMELS
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 LSCGYGTKDEDYGCVPCPAEKFSKG-GYQICRRHKDC---EGFFRATVLTPGDMENDAEC
::.: :: :: : ..:.. :.: :. :: . : .:. . .:: :
NP_683 KECGFGY-GEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANC----SATSDAIC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 GPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTK-ECVGATSGASANFPGTSGSSTLSPFQ
: ::::.: ... .. : : : :: . .:.. .. .. .:.. :: .
NP_683 GDCLPGFYR-KTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKI------ASTASSPRD
120 130 140 150 160
180 190 200 210 220 230
pF1KB0 HAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMF--YILKTKPSAPACCTSHPGKSVE
: ::... :..:. ..:. :. .:. ... :::
NP_683 TA---------LAAVICSALATV-LLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSE
170 180 190 200 210
240 250 260 270 280 290
pF1KB0 AQVSKDEEKKEAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEP
NP_683 LSCFDRPQLHEYAHRACCQCRRDSVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASL
220 230 240 250 260 270
>>XP_005266502 (OMIM: 606122) PREDICTED: tumor necrosis (423 aa)
initn: 201 init1: 103 opt: 262 Z-score: 264.6 bits: 58.1 E(85289): 5.3e-08
Smith-Waterman score: 267; 28.9% identity (55.5% similar) in 211 aa overlap (13-216:16-203)
10 20 30 40 50
pF1KB0 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPY
: ::. : :.. : ..: ..:. ... : : : :::: :
XP_005 MALKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRS-GNCVPCNQCGPGMELS
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 LSCGYGTKDEDYGCVPCPAEKFSKG-GYQICRRHKDC---EGFFRATVLTPGDMENDAEC
::.: :: :: : ..:.. :.: :. :: . : .:. . .:: :
XP_005 KECGFGY-GEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANC----SATSDAIC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 GPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTK-ECVGATSGASANFPGTSGSSTLSPFQ
: ::::.: ... .. : : : :: . .:.. .. .. .:.. :: .
XP_005 GDCLPGFYR-KTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKI------ASTASSPRD
120 130 140 150 160
180 190 200 210 220 230
pF1KB0 HAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMF--YILKTKPSAPACCTSHPGKSVE
: ::... :..:. ..:. :. .:. ... :::
XP_005 TA---------LAAVICSALATV-LLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSE
170 180 190 200 210
240 250 260 270 280 290
pF1KB0 AQVSKDEEKKEAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEP
XP_005 LSCFDRPQLHEYAHRACCQCRRDSVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASL
220 230 240 250 260 270
>>XP_016876140 (OMIM: 606122) PREDICTED: tumor necrosis (423 aa)
initn: 201 init1: 103 opt: 262 Z-score: 264.6 bits: 58.1 E(85289): 5.3e-08
Smith-Waterman score: 267; 28.9% identity (55.5% similar) in 211 aa overlap (13-216:16-203)
10 20 30 40 50
pF1KB0 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPY
: ::. : :.. : ..: ..:. ... : : : :::: :
XP_016 MALKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRS-GNCVPCNQCGPGMELS
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 LSCGYGTKDEDYGCVPCPAEKFSKG-GYQICRRHKDC---EGFFRATVLTPGDMENDAEC
::.: :: :: : ..:.. :.: :. :: . : .:. . .:: :
XP_016 KECGFGY-GEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANC----SATSDAIC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 GPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTK-ECVGATSGASANFPGTSGSSTLSPFQ
: ::::.: ... .. : : : :: . .:.. .. .. .:.. :: .
XP_016 GDCLPGFYR-KTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKI------ASTASSPRD
120 130 140 150 160
180 190 200 210 220 230
pF1KB0 HAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMF--YILKTKPSAPACCTSHPGKSVE
: ::... :..:. ..:. :. .:. ... :::
XP_016 TA---------LAAVICSALATV-LLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSE
170 180 190 200 210
240 250 260 270 280 290
pF1KB0 AQVSKDEEKKEAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEP
XP_016 LSCFDRPQLHEYAHRACCQCRRDSVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASL
220 230 240 250 260 270
448 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:51:25 2016 done: Sat Nov 5 16:51:26 2016
Total Scan time: 6.240 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]