Result of FASTA (ccds) for
pF1KB0413
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0413, 467 aa
1>>>pF1KB0413 467 - 467 aa - 467 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2544+/-0.000725; mu= 18.6898+/- 0.044
mean_var=82.1255+/-15.994, 0's: 0 Z-trim(111.3): 39 B-trim: 57 in 2/49
Lambda= 0.141526
statistics sampled from 12269 (12307) to 12269 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.378), width: 16
Scan time: 3.270
The best scores are: opt bits E(32554)
CCDS343.1 TINAGL1 gene_id:64129|Hs108|chr1 ( 467) 3459 715.8 2.3e-206
CCDS72745.1 TINAGL1 gene_id:64129|Hs108|chr1 ( 362) 2638 548.1 5.6e-156
CCDS55586.1 TINAGL1 gene_id:64129|Hs108|chr1 ( 436) 2245 467.9 9.2e-132
CCDS4955.1 TINAG gene_id:27283|Hs108|chr6 ( 476) 1525 320.9 1.8e-87
CCDS5986.1 CTSB gene_id:1508|Hs108|chr8 ( 339) 412 93.6 3.5e-19
CCDS8282.1 CTSC gene_id:1075|Hs108|chr11 ( 463) 277 66.1 8.8e-11
>>CCDS343.1 TINAGL1 gene_id:64129|Hs108|chr1 (467 aa)
initn: 3459 init1: 3459 opt: 3459 Z-score: 3818.2 bits: 715.8 E(32554): 2.3e-206
Smith-Waterman score: 3459; 100.0% identity (100.0% similar) in 467 aa overlap (1-467:1-467)
10 20 30 40 50 60
pF1KB0 MWRCPLGLLLLLPLAGHLALGAQQGRGRRELAPGLHLRGIRDAGGRYCQEQDLCCRGRAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MWRCPLGLLLLLPLAGHLALGAQQGRGRRELAPGLHLRGIRDAGGRYCQEQDLCCRGRAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 DCALPYLGAICYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DCALPYLGAICYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 IRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 RVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRER
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 DEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMEN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 GPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKY
370 380 390 400 410 420
430 440 450 460
pF1KB0 WTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 WTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
430 440 450 460
>>CCDS72745.1 TINAGL1 gene_id:64129|Hs108|chr1 (362 aa)
initn: 2638 init1: 2638 opt: 2638 Z-score: 2913.8 bits: 548.1 E(32554): 5.6e-156
Smith-Waterman score: 2638; 100.0% identity (100.0% similar) in 362 aa overlap (106-467:1-362)
80 90 100 110 120 130
pF1KB0 FCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWDNCNRCTCQENRQWQC
::::::::::::::::::::::::::::::
CCDS72 MHGGRIYPVLGTYWDNCNRCTCQENRQWQC
10 20 30
140 150 160 170 180 190
pF1KB0 DQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGTIRPSSSVMNMHEIYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGTIRPSSSVMNMHEIYT
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB0 VLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLS
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB0 PQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRERDEAGPAPPCMMHSRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRERDEAGPAPPCMMHSRA
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB0 MGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQALMEVHEDFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQALMEVHEDFFL
220 230 240 250 260 270
380 390 400 410 420 430
pF1KB0 YKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 YKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERG
280 290 300 310 320 330
440 450 460
pF1KB0 HFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
::::::::::::::::::::::::::::::::
CCDS72 HFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
340 350 360
>>CCDS55586.1 TINAGL1 gene_id:64129|Hs108|chr1 (436 aa)
initn: 2237 init1: 2237 opt: 2245 Z-score: 2479.0 bits: 467.9 E(32554): 9.2e-132
Smith-Waterman score: 3147; 93.4% identity (93.4% similar) in 467 aa overlap (1-467:1-436)
10 20 30 40 50 60
pF1KB0 MWRCPLGLLLLLPLAGHLALGAQQGRGRRELAPGLHLRGIRDAGGRYCQEQDLCCRGRAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MWRCPLGLLLLLPLAGHLALGAQQGRGRRELAPGLHLRGIRDAGGRYCQEQDLCCRGRAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 DCALPYLGAICYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DCALPYLGAICYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 NCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGT
::::: ::::::::::::::::::::::::
CCDS55 NCNRC-------------------------------WQAGNHSAFWGMTLDEGIRYRLGT
130 140
190 200 210 220 230 240
pF1KB0 IRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASD
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB0 RVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRER
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB0 DEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMEN
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB0 GPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKY
330 340 350 360 370 380
430 440 450 460
pF1KB0 WTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
390 400 410 420 430
>>CCDS4955.1 TINAG gene_id:27283|Hs108|chr6 (476 aa)
initn: 1451 init1: 664 opt: 1525 Z-score: 1684.0 bits: 320.9 E(32554): 1.8e-87
Smith-Waterman score: 1525; 49.4% identity (73.5% similar) in 427 aa overlap (45-463:54-474)
20 30 40 50 60 70
pF1KB0 AGHLALGAQQGRGRRELAPGLHLRGIRDAGGRYCQEQDLCCRGRADDCALPYLGA--ICY
:.::.. ::. : : :. . .: .::
CCDS49 LSQREVDLEAYFTRNHTVLQGTRFKRAIFQGQYCRNFG-CCEDRDDGCVTEFYAANALCY
30 40 50 60 70 80
80 90 100 110 120
pF1KB0 CDLFCNRTVSDCCPDFWDFCLGV---PP---PFPPIQGCMHGGRIYPVLGTYWDNCNRCT
:: ::.: ::::::. .:: :: :. : .::.. :. : .. .::: ::
CCDS49 CDKFCDRENSDCCPDYKSFCREEKEWPPHTQPWYP-EGCFKDGQHYEEGSVIKENCNSCT
90 100 110 120 130 140
130 140 150 160 170 180
pF1KB0 CQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGTIRPSSS
:. ..::.:.:. ::: ..:. .:.:.::: : :.: ::::::..:...::::. ::
CCDS49 CS-GQQWKCSQHVCLVRSELIEQVNKGDYGWTAQNYSQFWGMTLEDGFKFRLGTLPPSPM
150 160 170 180 190 200
190 200 210 220 230 240
pF1KB0 VMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASDRVSIHS
...:.:. . : :: : :: :::. : :::: :::.:::::::.::.::..:.:
CCDS49 LLSMNEMTASLPATTDLPEFFVASYKWPGWTHGPLDQKNCAASWAFSTASVAADRIAIQS
210 220 230 240 250 260
250 260 270 280 290 300
pF1KB0 LGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGRERDEAGPA
:..: ::::::.:: .....:: .: .: :::.::.::.:: :::. .:. .
CCDS49 KGRYTANLSPQNLISCCAKNRHGCNSGSIDRAWWYLRKRGLVSHACYPL---FKDQNATN
270 280 290 300 310
310 320 330 340 350 360
pF1KB0 PPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQAL
: : ::. :::::.:: :::. ..: ::: .: ::..::. :::::.:.::::::.
CCDS49 NGCAMASRSDGRGKRHATKPCPNNVEKSNRIYQCSPPYRVSSNETEIMKEIMQNGPVQAI
320 330 340 350 360 370
370 380 390 400 410 420
pF1KB0 MEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANS
:.:.:::: :: ::: :. . . :.::. ::.::.:::: .:. :.: ::::
CCDS49 MQVREDFFHYKTGIYRHVTSTNKESEKYRKLQTHAVKLTGWGTLRGAQGQKEKFWIAANS
380 390 400 410 420 430
430 440 450 460
pF1KB0 WGPAWGERGHFRIVRGVNECDIESFVLGVWGRVGMEDMGHH
:: .::: :.:::.::::: :::......::.. :
CCDS49 WGKSWGENGYFRILRGVNESDIEKLIIAAWGQLTSSDEP
440 450 460 470
>>CCDS5986.1 CTSB gene_id:1508|Hs108|chr8 (339 aa)
initn: 510 init1: 144 opt: 412 Z-score: 457.8 bits: 93.6 E(32554): 3.5e-19
Smith-Waterman score: 583; 33.0% identity (59.3% similar) in 327 aa overlap (145-453:29-326)
120 130 140 150 160 170
pF1KB0 LGTYWDNCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGI
.... .:. : ::::.. :... ..
CCDS59 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHN--FYNVDMSYLK
10 20 30 40 50
180 190 200 210 220
pF1KB0 RY---RLGTIRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPN--LIHEPLDQGNCAGS
: :: .: . :: ... ::..:.: :.::. :.: :::.:..
CCDS59 RLCGTFLGGPKPPQRVMFTEDLK--------LPASFDAREQWPQCPTIKEIRDQGSCGSC
60 70 80 90 100
230 240 250 260 270 280
pF1KB0 WAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSC-DTHQQQGCRGGRLDGAWWFLRRRGVV
:::... . :::. ::. .:.. .: ..::.: . .:: :: :: : :.:.:
CCDS59 WAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLV
110 120 130 140 150 160
290 300 310 320 330
pF1KB0 S-----DH--CYPFS--GRERDEAGPAPPCMMHSRAMGRGKRQATAH-CPNSY--VNNND
: .: : :.: :. : ::: :.: .. : .: . ..:
CCDS59 SGGLYESHVGCRPYSIPPCEHHVNGSRPPCT------GEGDTPKCSKICEPGYSPTYKQD
170 180 190 200 210 220
340 350 360 370 380 390
pF1KB0 IYQVTPVYRLGSNDKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRR
. : .....:.:: :...::::.. . :. ::.:::.:.:.:. .
CCDS59 KHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEM--------
230 240 250 260 270
400 410 420 430 440 450
pF1KB0 HGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVW
: :...: ::: : .: :: .::::. ::. : :.:.:: ..: ::: :.
CCDS59 MGGHAIRILGWGVE---NGT--PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGI
280 290 300 310 320
460
pF1KB0 GRVGMEDMGHH
CCDS59 PRTDQYWEKI
330
>>CCDS8282.1 CTSC gene_id:1075|Hs108|chr11 (463 aa)
initn: 395 init1: 161 opt: 277 Z-score: 307.0 bits: 66.1 E(32554): 8.8e-11
Smith-Waterman score: 460; 29.6% identity (58.2% similar) in 318 aa overlap (143-453:171-455)
120 130 140 150 160 170
pF1KB0 PVLGTYWDNCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDE
: ...:::: . .: : .. . .:: .
CCDS82 KVGTASENVYVNIAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGD
150 160 170 180 190 200
180 190 200 210 220
pF1KB0 GIRYRLG----TIRPSSSVMNMHEIYTVLNPGEVLPTAFEASE-KWPNLIHEPLDQGNCA
:: : ::. . .. . .:. :::... . . :.. .:..:.
CCDS82 MIRRSGGHSRKIPRPKPAPLTAEIQQKILH----LPTSWDWRNVHGINFVSPVRNQASCG
210 220 230 240 250
230 240 250 260 270 280
pF1KB0 GSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGR-LDGAWWFLRRRG
. ..:.. .. :. : . . .::.::::...:: .. :::.:: : . . :
CCDS82 SCYSFASMGMLEARIRILTNNSQTPILSPQEVVSC-SQYAQGCEGGFPYLIAGKYAQDFG
260 270 280 290 300 310
290 300 310 320 330 340
pF1KB0 VVSDHCYPFSGRERDEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRL
.: . :.:..: . :: :. : : ... . : :
CCDS82 LVEEACFPYTGTD-------SPCKMKE------------DCFRYY--SSEYHYVGGFY--
320 330 340 350
350 360 370 380 390 400
pF1KB0 GSNDKEIMK-ELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKIT
:. .. .:: ::...::. . .::..::. :: ::: :: .: : . .:.: ..
CCDS82 GGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT--GLRDPFNPFELTNHAVLLV
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB0 GWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVWGRVGMEDMG
:.: .. . . :: . :::: .::: :.::: ::..:: :::...
CCDS82 GYGTDS---ASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPKL
420 430 440 450 460
pF1KB0 HH
467 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:52:01 2016 done: Sat Nov 5 11:52:02 2016
Total Scan time: 3.270 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]