Result of FASTA (ccds) for
pF1KB0407
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0407, 465 aa
1>>>pF1KB0407 465 - 465 aa - 465 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8697+/-0.000795; mu= 16.5250+/- 0.048
mean_var=102.1679+/-20.164, 0's: 0 Z-trim(111.3): 40 B-trim: 8 in 1/49
Lambda= 0.126887
statistics sampled from 12258 (12297) to 12258 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.378), width: 16
Scan time: 3.250
The best scores are: opt bits E(32554)
CCDS5281.1 PARK2 gene_id:5071|Hs108|chr6 ( 465) 3379 628.9 3.4e-180
CCDS5282.1 PARK2 gene_id:5071|Hs108|chr6 ( 437) 1945 366.4 3.4e-101
CCDS5283.1 PARK2 gene_id:5071|Hs108|chr6 ( 316) 1940 365.3 5.1e-101
>>CCDS5281.1 PARK2 gene_id:5071|Hs108|chr6 (465 aa)
initn: 3379 init1: 3379 opt: 3379 Z-score: 3348.5 bits: 628.9 E(32554): 3.4e-180
Smith-Waterman score: 3379; 100.0% identity (100.0% similar) in 465 aa overlap (1-465:1-465)
10 20 30 40 50 60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
370 380 390 400 410 420
430 440 450 460
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
:::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
430 440 450 460
>>CCDS5282.1 PARK2 gene_id:5071|Hs108|chr6 (437 aa)
initn: 1939 init1: 1939 opt: 1945 Z-score: 1930.2 bits: 366.4 E(32554): 3.4e-101
Smith-Waterman score: 3090; 94.0% identity (94.0% similar) in 465 aa overlap (1-465:1-437)
10 20 30 40 50 60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQ--
130 140 150 160 170
190 200 210 220 230 240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
::::::::::::::::::::::::::::::::::
CCDS52 --------------------------EFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
180 190 200 210
250 260 270 280 290 300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
340 350 360 370 380 390
430 440 450 460
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
:::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
400 410 420 430
>>CCDS5283.1 PARK2 gene_id:5071|Hs108|chr6 (316 aa)
initn: 1940 init1: 1940 opt: 1940 Z-score: 1927.1 bits: 365.3 E(32554): 5.1e-101
Smith-Waterman score: 2004; 68.0% identity (68.0% similar) in 465 aa overlap (1-465:1-316)
10 20 30 40 50 60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ---
10 20 30 40 50
70 80 90 100 110 120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
CCDS52 ------------------------------------------------------------
130 140 150 160 170 180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
CCDS52 ------------------------------------------------------------
190 200 210 220 230 240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
::::::::::::::::::::::::::::::::::
CCDS52 --------------------------EFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
60 70 80 90
250 260 270 280 290 300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
100 110 120 130 140 150
310 320 330 340 350 360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
160 170 180 190 200 210
370 380 390 400 410 420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
220 230 240 250 260 270
430 440 450 460
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
:::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
280 290 300 310
465 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:51:26 2016 done: Sat Nov 5 17:51:27 2016
Total Scan time: 3.250 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]