FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0166, 1156 aa
  1>>>pF1KB0166 1156 - 1156 aa - 1156 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0006+/-0.000413; mu= 20.3681+/- 0.026
 mean_var=100.9224+/-20.375, 0's: 0 Z-trim(112.7): 7  B-trim: 216 in 1/57
 Lambda= 0.127668
 statistics sampled from 21794 (21796) to 21794 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.256), width:  16
 Scan time: 15.330

The best scores are:                                      opt bits E(85289)
NP_060700 (OMIM: 607613) nuclear pore complex prot (1156) 7561 1404.2       0


>>NP_060700 (OMIM: 607613) nuclear pore complex protein   (1156 aa)
 initn: 7561 init1: 7561 opt: 7561  Z-score: 7524.6  bits: 1404.2 E(85289):    0
Smith-Waterman score: 7561; 100.0% identity (100.0% similar) in 1156 aa overlap (1-1156:1-1156)

               10        20        30        40        50        60
pF1KB0 MFPAAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSSLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MFPAAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSSLSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 RGTPTRMFPHHSITESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RGTPTRMFPHHSITESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 EKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 EGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIPESSGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIPESSGKI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 HQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSNISKWELD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSNISKWELD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 DSSEKHAYSWDINRALKENITDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLVILAAAWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DSSEKHAYSWDINRALKENITDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLVILAAAWH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 SADNPCLIYYSLITIEDNGCQMSDAVTVEVTQYNPPFQSEDLILCQLTVPNFSNQTAYLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SADNPCLIYYSLITIEDNGCQMSDAVTVEVTQYNPPFQSEDLILCQLTVPNFSNQTAYLY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 NESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIFSRNSGLVSITSRENVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIFSRNSGLVSITSRENVS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB0 ILAEDLEGSLASSVAGPNSESMIFETTTKNETIAQEDKIKLLKAAFLQYCRKDLGHAQMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ILAEDLEGSLASSVAGPNSESMIFETTTKNETIAQEDKIKLLKAAFLQYCRKDLGHAQMV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB0 VDELFSSHSDLDSDSELDRAVTQISVDLMDDYPASDPRWAESVPEEAPGFSNTSLIILHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VDELFSSHSDLDSDSELDRAVTQISVDLMDDYPASDPRWAESVPEEAPGFSNTSLIILHQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB0 LEDKMKAHSFLMDFIHQVGLFGRLGSFPVRGTPMATRLLLCEHAEKLSAAIVLKNHHSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LEDKMKAHSFLMDFIHQVGLFGRLGSFPVRGTPMATRLLLCEHAEKLSAAIVLKNHHSRL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB0 SDLVNTAILIALNKREYEIPSNLTPADVFFREVSQVDTICECLLEHEEQVLRDAPMDSIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SDLVNTAILIALNKREYEIPSNLTPADVFFREVSQVDTICECLLEHEEQVLRDAPMDSIE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB0 WAEVVINVNNILKDMLQAASHYRQNRNSLYRREESLEKEPEYVPWTATSGPGGIRTVIIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 WAEVVINVNNILKDMLQAASHYRQNRNSLYRREESLEKEPEYVPWTATSGPGGIRTVIIR
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB0 QHEIVLKVAYPQADSNLRNIVTEQLVALIDCFLDGYVSQLKSVDKSSNRERYDNLEMEYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QHEIVLKVAYPQADSNLRNIVTEQLVALIDCFLDGYVSQLKSVDKSSNRERYDNLEMEYL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB0 QKRSDLLSPLLSLGQYLWAASLAEKYCDFDILVQMCEQTDNQSRLQRYMTQFADQNFSDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QKRSDLLSPLLSLGQYLWAASLAEKYCDFDILVQMCEQTDNQSRLQRYMTQFADQNFSDF
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB0 LFRWYLEKGKRGKLLSQPISQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LFRWYLEKGKRGKLLSQPISQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANME
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB0 TRYFAKKKTLLGLSKLAALASDFSEDMLQEKIEEMAEQERFLLHQETLPEQLLAEKQLNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TRYFAKKKTLLGLSKLAALASDFSEDMLQEKIEEMAEQERFLLHQETLPEQLLAEKQLNL
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB0 SAMPVLTAPQLIGLYICEENRRANEYDFKKALDLLEYIDEEEDININDLKLEILCKALQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SAMPVLTAPQLIGLYICEENRRANEYDFKKALDLLEYIDEEEDININDLKLEILCKALQR
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB0 DNWSSSDGKDDPIEVSKDSIFVKILQKLLKDGIQLSEYLPEVKDLLQADQLGSLKSNPYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DNWSSSDGKDDPIEVSKDSIFVKILQKLLKDGIQLSEYLPEVKDLLQADQLGSLKSNPYF
             1090      1100      1110      1120      1130      1140

             1150      
pF1KB0 EFVLKANYEYYVQGQI
       ::::::::::::::::
NP_060 EFVLKANYEYYVQGQI
             1150      




1156 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:41:08 2016 done: Thu Nov  3 11:41:11 2016
 Total Scan time: 15.330 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]