Result of FASTA (ccds) for
pF1KB0056
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0056, 1533 aa
1>>>pF1KB0056 1533 - 1533 aa - 1533 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.4004+/-0.00121; mu= -13.4840+/- 0.073
mean_var=693.3168+/-144.572, 0's: 0 Z-trim(117.8): 107 B-trim: 189 in 1/54
Lambda= 0.048709
statistics sampled from 18568 (18671) to 18568 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.574), width: 16
Scan time: 8.320
The best scores are: opt bits E(32554)
CCDS4708.1 PRRC2A gene_id:7916|Hs108|chr6 (2157) 6038 440.8 2.2e-122
CCDS1296.2 PRRC2C gene_id:23215|Hs108|chr1 (2817) 1171 98.9 2.4e-19
CCDS48044.1 PRRC2B gene_id:84726|Hs108|chr9 (2229) 894 79.3 1.5e-13
>>CCDS4708.1 PRRC2A gene_id:7916|Hs108|chr6 (2157 aa)
initn: 6028 init1: 5978 opt: 6038 Z-score: 2310.6 bits: 440.8 E(32554): 2.2e-122
Smith-Waterman score: 6158; 63.8% identity (72.2% similar) in 1565 aa overlap (1-1532:1-1454)
10 20 30 40 50 60
pF1KB0 MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 NLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPLESQPLPASQTPASN
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
CCDS47 NLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 QPKRPPAAPENTPLVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QPKRPPAAPENTPLVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 KAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 PQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPTPDGPSRFPRVAGPRGSGPPMRLVEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPTPDGPSRFPRVAGPRGSGPPMRLVEP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 VGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSDEEGAEGHRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSDEEGAEGHRD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 SQSASGEERPPEADGKKGNSPNSEPPTPKTAWAETSRPPETEPGPPAPKPPLPPPHRGPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SQSASGEERPPEADGKKGNSPNSEPPTPKTAWAETSRPPETEPGPPAPKPPLPPPHRGPA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 GNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB0 ERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPKELPAPPAPPPASAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPKELPAPPAPPPASAP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB0 TPEKEPEEPAQAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPE
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TPETEPEEPAQAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB0 PPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB0 QHQWQQHQQGSAPPTPVPPSPPQPVTLGAVPAPQAPPPPPKALYPGALGRPPPMPPMNFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QHQWQQHQQGSAPPTPVPPSPPQPVTLGAVPAPQAPPPPPKALYPGALGRPPPMPPMNFD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB0 PRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFDRHAPAMLRER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFDRHAPAMLRER
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB0 GTPPVDPKLAWVGDVFTATPAEPRPLTSPLRQAADEDDKGMRSETPPVPPPPPSSSAVFR
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GTPPVDPKLAWVGDVFTATPAEPRPLTSPLRQAADEDDKGMRSETPPVPPPPP-------
790 800 810 820 830
850 860 870 880 890
pF1KB0 LDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGPPQAPQ-GPSPRPPTRYEPQRV
. : :. ... . . :: :: : :: . . . :: . :: .
CCDS47 ---YLASYPGFPENGAPGPPISRFPLEEPG--PRPLPWPPGSDEVAKIQTPPPKKEPPKE
840 850 860 870 880
900 910 920 930 940 950
pF1KB0 NSGLSSDPHFEEPGPMVRGVGGTPRDSAGVSPFPPKRRERPPRKPELLQEESLPPPHSSG
... . : : .:::: :.: .: ::.:. : : : .:.
CCDS47 ETAQLTGP--EAGRKPARGVG-----SGGQGPPPPRRESRT--------ETRWGPRPGSS
890 900 910 920 930
960 970 980 990 1000 1010
pF1KB0 FLGSKPEGPGPQAESRDTGTEALTPHIWNRLHTATSRKSYRPSSMEPWMEPLSPFEDVAG
: :: :: : : .: : .: :...: : .:.:. :
CCDS47 RRGIPPEEPG--APPRRAG-----P----------IKKPPPPTKVEEL--PPKPLEQ--G
940 950 960 970
1020 1030 1040 1050 1060 1070
pF1KB0 TEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKGAAEGPPKRPGGSSPLNAVPCEGPP-
: . . :. . .:: ... :.:.:. : . .: . .. . :.:
CCDS47 DETPKPPKPDPLKITKGKLGGP--KETPPNGNLSPAPR--LRRDYSYERVGPTSCRGRGR
980 990 1000 1010 1020
1080 1090 1100 1110 1120 1130
pF1KB0 GSEPPRRPPPAPHDGDRKELPREQPLPPGPIGTERSQRTDRGTEPGPIRPSHRPGPPVQF
: : : : . : . . . : : : : : :.: ::.
CCDS47 GEYFARGRGFRGTYGGRGRGARSREFR-----SYREFRGDDGRGGGTGGPNH---PPAPR
1030 1040 1050 1060 1070 1080
1140 1150 1160 1170 1180 1190
pF1KB0 GTSDKDSDLRLVVGDSLKAEKELTASVTEAIPVSRDWELLPSAAASAEPQSKNLDSGHCV
: . :. : .. . :. .:. ... .: :: . :. .: . .
CCDS47 GRT--ASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTPKEGTLTQVPLA
1090 1100 1110 1120 1130
1200 1210 1220 1230 1240 1250
pF1KB0 PEPSSSGQRLYPEVFYGSAG--------PSSSQISGGAMDSQLHPNSGGFRPGTPSLHPY
: : .. : : . .: :: .:: :. : :. : . :: :
CCDS47 PPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGRGGGRPPPQVCP---GWSPPAKSLAP-
1140 1150 1160 1170 1180 1190
1260 1270 1280 1290 1300
pF1KB0 RSQPLYLPPGPAPPSALLSGVALKGQFLDFSTMQATELGKLPAGGVLYP----PPSFLYS
..: : :: ::: :: ... ... :. ...: . : ..
CCDS47 -KKP---PTGPLPPSKE----PLKEKLIPGPLSPVARGGSNGGSNVGMEDGERPRRRRHG
1200 1210 1220 1230 1240
1310 1320 1330 1340 1350 1360
pF1KB0 PAFCPSPLPD-TSLLQVRQDLPSPSDFYSTPLQPGGQSGFLPSGAPAQQMLLPMVDSQLP
: . : : : :.. :. : : ::..::. . : :
CCDS47 RAQQQDKPPRFRRLKQERENAARGSE--------GKPSLTLPASAPGPEEALTTV-----
1250 1260 1270 1280 1290
1370 1380 1390 1400 1410 1420
pF1KB0 VVNFGSLPPAPPPAP---PPLSLLPVGPALQPPSLAVRPPPAPATRVLPSPARPFPASLG
.. ::: : : :: : . : . . : . : :
CCDS47 -----TVAPAPRRAAAKSPDLSNQNSDQANEEWETASESSDFTSERRGDKEAPP------
1300 1310 1320 1330 1340
1430 1440 1450 1460 1470 1480
pF1KB0 RAELHPVELKPFQDYQKLSSNLGGPGSSRTPP-TGRSFSGLNSRLKATPSTYSGVFRTQR
:: : : : .. :: :.. .: .. : . :..: : : : : .::
CCDS47 -----PVLLTP-----KAVGTPGGGGGGAVPGISAMSRGDLSQRAKDL-SKRS--FSSQR
1350 1360 1370 1380
1490 1500 1510 1520
pF1KB0 VDLYQQASPPDALRWIPKPWERTG-----PPPREGPSRRAEE----PGSRG----DKEPG
. .: : . .: : : ::.: .. : .:. .. ::
CCDS47 PGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPG
1390 1400 1410 1420 1430 1440
1530
pF1KB0 LP-PPR
:: ::
CCDS47 LPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGLPQAPQG
1450 1460 1470 1480 1490 1500
>--
initn: 4960 init1: 4960 opt: 4960 Z-score: 1901.2 bits: 365.0 E(32554): 1.4e-99
Smith-Waterman score: 4960; 99.7% identity (99.9% similar) in 703 aa overlap (831-1533:1455-2157)
810 820 830 840 850 860
pF1KB0 AEPRPLTSPLRQAADEDDKGMRSETPPVPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLS
::::::::::::::::::::::::::::::
CCDS47 PGRGDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLS
1430 1440 1450 1460 1470 1480
870 880 890 900 910 920
pF1KB0 SRQGSVTAPGGHPRHKPGPPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVG
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS47 SRQGSVTAPGGHPRHKPGLPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVG
1490 1500 1510 1520 1530 1540
930 940 950 960 970 980
pF1KB0 GTPRDSAGVSPFPPKRRERPPRKPELLQEESLPPPHSSGFLGSKPEGPGPQAESRDTGTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GTPRDSAGVSPFPPKRRERPPRKPELLQEESLPPPHSSGFLGSKPEGPGPQAESRDTGTE
1550 1560 1570 1580 1590 1600
990 1000 1010 1020 1030 1040
pF1KB0 ALTPHIWNRLHTATSRKSYRPSSMEPWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQVSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ALTPHIWNRLHTATSRKSYRPSSMEPWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQVSSG
1610 1620 1630 1640 1650 1660
1050 1060 1070 1080 1090 1100
pF1KB0 PCSQRSSPDGGLKGAAEGPPKRPGGSSPLNAVPCEGPPGSEPPRRPPPAPHDGDRKELPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PCSQRSSPDGGLKGAAEGPPKRPGGSSPLNAVPCEGPPGSEPPRRPPPAPHDGDRKELPR
1670 1680 1690 1700 1710 1720
1110 1120 1130 1140 1150 1160
pF1KB0 EQPLPPGPIGTERSQRTDRGTEPGPIRPSHRPGPPVQFGTSDKDSDLRLVVGDSLKAEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EQPLPPGPIGTERSQRTDRGTEPGPIRPSHRPGPPVQFGTSDKDSDLRLVVGDSLKAEKE
1730 1740 1750 1760 1770 1780
1170 1180 1190 1200 1210 1220
pF1KB0 LTASVTEAIPVSRDWELLPSAAASAEPQSKNLDSGHCVPEPSSSGQRLYPEVFYGSAGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LTASVTEAIPVSRDWELLPSAAASAEPQSKNLDSGHCVPEPSSSGQRLYPEVFYGSAGPS
1790 1800 1810 1820 1830 1840
1230 1240 1250 1260 1270 1280
pF1KB0 SSQISGGAMDSQLHPNSGGFRPGTPSLHPYRSQPLYLPPGPAPPSALLSGVALKGQFLDF
::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS47 SSQISGGAMDSQLHPNSGGFRPGTPSLHPYRSQPLYLPPGPAPPSALLSGLALKGQFLDF
1850 1860 1870 1880 1890 1900
1290 1300 1310 1320 1330 1340
pF1KB0 STMQATELGKLPAGGVLYPPPSFLYSPAFCPSPLPDTSLLQVRQDLPSPSDFYSTPLQPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 STMQATELGKLPAGGVLYPPPSFLYSPAFCPSPLPDTSLLQVRQDLPSPSDFYSTPLQPG
1910 1920 1930 1940 1950 1960
1350 1360 1370 1380 1390 1400
pF1KB0 GQSGFLPSGAPAQQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQPPSLAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GQSGFLPSGAPAQQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQPPSLAVR
1970 1980 1990 2000 2010 2020
1410 1420 1430 1440 1450 1460
pF1KB0 PPPAPATRVLPSPARPFPASLGRAELHPVELKPFQDYQKLSSNLGGPGSSRTPPTGRSFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PPPAPATRVLPSPARPFPASLGRAELHPVELKPFQDYQKLSSNLGGPGSSRTPPTGRSFS
2030 2040 2050 2060 2070 2080
1470 1480 1490 1500 1510 1520
pF1KB0 GLNSRLKATPSTYSGVFRTQRVDLYQQASPPDALRWIPKPWERTGPPPREGPSRRAEEPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GLNSRLKATPSTYSGVFRTQRVDLYQQASPPDALRWIPKPWERTGPPPREGPSRRAEEPG
2090 2100 2110 2120 2130 2140
1530
pF1KB0 SRGDKEPGLPPPR
:::::::::::::
CCDS47 SRGDKEPGLPPPR
2150
>>CCDS1296.2 PRRC2C gene_id:23215|Hs108|chr1 (2817 aa)
initn: 1214 init1: 344 opt: 1171 Z-score: 460.7 bits: 98.9 E(32554): 2.4e-19
Smith-Waterman score: 1819; 30.5% identity (52.0% similar) in 1674 aa overlap (1-1533:1-1562)
10 20 30 40 50 60
pF1KB0 MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPA
::..:: ..:.::::::..:.::.:::::::: :: .. ::::::::::.:.:::::::
CCDS12 MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTA--RHGLQSLGKVGISRRMPPPA
10 20 30 40 50
70 80 90 100 110 120
pF1KB0 NLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPLESQPLPASQTPASN
::::::::::::::::..:::::::::::::: . . .. .: ::
CCDS12 NLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEE----------KTPEVP----PA--
60 70 80 90 100
130 140 150 160 170 180
pF1KB0 QPKRPPAAPENTPLVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQD
::: ::: : : . :::: : .:..::: ...: . ..:::.:::::::.
CCDS12 QPKPGVAAP---PEVAPAPKSWA--SNKQGGQGDGIQVNSQF----QQEFPSLQAAGDQE
110 120 130 140 150
190 200 210 220 230
pF1KB0 KAAKERESAEQSSGPGPSLRPQNSTTWRDGG-GRGPDELEGPDSKLHHGHDPRGGLQPS-
: ::.:. ... :::::::: : . ::::: . : : :: . .: . .
CCDS12 K--KEKETNDDNYGPGPSLRPPNVACWRDGGKAAGSPSSSDQDEKLPGQDESTAGTSEQN
160 170 180 190 200 210
240 250 260 270
pF1KB0 ------------GPPQFP----------PYRGMMPPFMYP--PYLPFPPPYGPQGPYRYP
:::: ::.::::.:. : . .:: .::. :.:
CCDS12 DILKVVEKRIACGPPQAKLNGQQAALASQYRAMMPPYMFQQYPRMTYPPLHGPM---RFP
220 230 240 250 260
280 290 300 310 320 330
pF1KB0 TPDGPSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKE---FDQLDQENDDGWAGAHE
:: : :: ::: . :::::. ..::: ::.:: : :.:::::.
CCDS12 ----PSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQM
270 280 290 300 310 320
340 350 360 370 380
pF1KB0 EVDYTEKLKFSDE-EDGRDSDEEGAEGHRDSQSASGEERPPEADGKKGNSPNSE-PPTPK
::::::.:.:::. :.: .: .:. . :... ..: :.: .... .:. : :.
CCDS12 EVDYTEQLNFSDDDEQGSNSPKENNSEDQGSKASENNENKKETDEVSNTKSSSQIPAQPS
330 340 350 360 370 380
390 400 410 420 430 440
pF1KB0 TAWAETSRPP--ETEPGPPAPKPPLPPPHRGPAGNWGPPGDY--PDRGGP-PCKPPAPED
.: . .. : . : : . :::: . : . :: : : :: : : . :
CCDS12 VAKVPYGKGPSFNQERGTSSH---LPPPPKLLAQQHPPPDRQAVPGRPGPFPSKQQVA-D
390 400 410 420 430 440
450 460 470 480 490 500
pF1KB0 EDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRL
::: :.:::.:.: ::: ::::::.:::::::::.:.:.:::::::::::::.: .:.
CCDS12 EDEIWKQRRRQQS-EISAAVERARKRREEEERRMEEQRKAACAEKLKRLDEKLGILEKQP
450 460 470 480 490
510 520 530 540 550 560
pF1KB0 KAEPAAPPAAPSTPAPPPAVPKELPAPPAPPPAS--APTPEKEPE-EPAQAPPAQSTPTP
. : . . :: . ::: : : : .
CCDS12 SPEEIREREREKEREREKELEKEQEQEREKEREKDRERQQEKEKELEKEQEKQREMEKER
500 510 520 530 540 550
570 580 590 600
pF1KB0 GVAAAPTLVSGGGSTSSTSSGSFEAS----------------PVEPQL-PSKEGPEPP--
: . . .. . . . : ::.: : : :
CCDS12 KQEKEKELERQKEKEKELQKMKEQEKECELEKEREKLEEKIEPREPNLEPMVEKQESENS
560 570 580 590 600 610
610 620 630 640
pF1KB0 ---EEVPPPT-----------TPPVPKVEPKGDGIGPTRQP-PSQGLGYPK-YQKSLPPR
:: : : :: : ..::.. . :: :. :: : .:::::::
CCDS12 CNKEEEPVFTRQDSNRSEKEATPVVHETEPESGS-----QPRPAVLSGYFKQFQKSLPPR
620 630 640 650 660 670
650 660 670 680 690 700
pF1KB0 FQRQQQEQLLKQQQQHQWQQHQQGSAPPTPVPPSPPQPVTLGAVPAPQAPPPPPKALYPG
:::::. :..:.::::.:: .. : :: .: . . .:::: . ::
CCDS12 FQRQQE-----QMKQQQWQQQQQQGVLPQTVPSQPSSST---------VPPPPHRPLYQP
680 690 700 710 720
710 720 730 740 750 760
pF1KB0 ALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYP--PG-VHPSGLVPRERSDSGG
.: . :.:::::.:. :.:::...::: .:. : :: . :. :. :.. ...
CCDS12 MQPHPQHLASMGFDPRWLMMQSYMDPRMMSGRPAMDIPPIHPGMIPPKPLMRRDQMEGSP
730 740 750 760 770 780
770 780 790 800 810 820
pF1KB0 SSSEPFDRHAPAMLRERGTPPVDPKLAWVGDVFTATPAEPRPLTSPLRQAADEDDKGMRS
.::: :. : :... .:.. : .: . :::. :.: : :. . .::
CCDS12 NSSESFE-HIARSARDHAISLSEPRMLWGSDPYPH--AEPQQATTP---KATEEPEDVRS
790 800 810 820 830
830 840 850 860 870 880
pF1KB0 ETPPVPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGPPQAP
:. .. .: . . : . :... .. : .. .:.: . :.
CCDS12 EAALDQEQITAAYSVEHNQLEAHPKADFIRESSEAQVQKFLSRSVEDVRPHHTDANNQSA
840 850 860 870 880 890
890 900 910 920 930
pF1KB0 QGPSPRPPTRYEPQ--RVNSGLSSDPHFEEPGPMVRGVGGTPR-DSAGVSPFP--PKRRE
.: : :: :. :.. :.: .. . .: . : . : : ::
CCDS12 CFEAPDQKTLSAPQEERI-SAVESQPSRKRS--VSHGSNHTQKPDEQRSEPSAGIPKVTS
900 910 920 930 940 950
940 950 960 970 980 990
pF1KB0 R--PPRKPELLQEESLPPPHSSGFLGSKPEGPGPQAESRDTGTEALTPHIW-NRLHTATS
: ..: ::. :.. ::. :. ::: :. .. . :. :: . ...
CCDS12 RCIDSKEPIERPEEK---PKKEGFIRSS-EGPKPEKVYKSKSETRWGPRPSSNRREEVND
960 970 980 990 1000
1000 1010 1020 1030 1040 1050
pF1KB0 RKSYRPSSME-PWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKG
: : . .. : .. .. :. . ...... .. :. ... :
CCDS12 RPVRRSGPIKKPVLRDMK--EEREQRKEKEGEKAEKVTEKVVVKPEKTEKKDLPP-----
1010 1020 1030 1040 1050 1060
1060 1070 1080 1090 1100 1110
pF1KB0 AAEGPPKRPGGSSPLNAVPCEGPPGSEPPRRPPPAPHDGDRKELPR---EQPLPP-GPIG
:: : .:.. : :: .: . :. . . . : :.:: : . .
CCDS12 ----PPPPPQPPAPIQ--PQSVPPPIQPEAEKFPSTETATLAQKPSQDTEKPLEPVSTVQ
1070 1080 1090 1100 1110
1120 1130 1140 1150 1160
pF1KB0 TERSQRT-DRGTEPGPI-RPSHRPGPPVQFGTSDKDSDLRLVVGDS---LKAEKELTASV
.: . .: .. : .:. . ..: .. :: .. :: .: :. : .
CCDS12 VEPAVKTVNQQTMAAPVVKEEKQPEKVIS-----KDLVIERPRPDSRPAVKKESTLPPRT
1120 1130 1140 1150 1160
1170 1180 1190 1200 1210
pF1KB0 TEAIPVSRDWELLPSAAASAEPQSKNLDSGHCVPEPSSSGQ--------RLYPEVFYGSA
::: .:. . .. ... . :. . : .:. : ::. : .
CCDS12 YWKEARERDW--FPDQGYRGRGRGEYYSRGRSY-RGSYGGRGRGGRGHTRDYPQ--YRDN
1170 1180 1190 1200 1210 1220
1220 1230 1240 1250 1260 1270
pF1KB0 GPSSSQISGGAM----DSQLHPNSGGFRPGTPSLHPYRSQPLYLPPGPAPPSALLSGVAL
: . .: .: . .:. . .:. :. .:. . :.. . :: .
CCDS12 KPRAEHIPSGPLRQREESETRSESSDFEV-VPKRRRQRGSETDTD-SEIHESASDKDSLS
1230 1240 1250 1260 1270 1280
1280 1290 1300 1310 1320 1330
pF1KB0 KGQFLDFSTMQATELGKLPAGGVLYPPPSFLYSPAFCPSPLPDTSLLQ---VRQDLPSPS
::.. . .: : . : :: .: :. ::. ::.: .
CCDS12 KGKL---PKREERPENKKP----VKPHSSF--KPD--NHVRIDNRLLEKPYVRDDDKAKP
1290 1300 1310 1320 1330
1340 1350 1360 1370 1380
pF1KB0 DFY--STPLQPG-G----QSGFLPSGAPAQQMLL--PMV-DSQLPVVNFGSLPPAPPPAP
: . : . : : ..: :.: :.. : : :.: . : : : .
CCDS12 GFLPKGEPTRRGRGGTFRRGGRDPGGRPSRPSTLRRPAYRDNQWNPRQ--SEVPKPEDGE
1340 1350 1360 1370 1380
1390 1400 1410 1420 1430
pF1KB0 PPL---SLLPVGPALQPPSLAVRPPPAPATRVLPSPARPF----PASLGRAELHPVELK-
:: ...:.. .::.. . :: :.:: : . : . . . :
CCDS12 PPRRHEQFIPIAADKRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKS
1390 1400 1410 1420 1430 1440
1440 1450 1460 1470 1480
pF1KB0 ------PFQDY-----QKLSSNLGGPGSSRTPPTGRSFSGLNSRLKATPSTYSGVFRTQR
: . :. ..:: ....:: . . :. .. . .. :. : .:
CCDS12 NEVVAVPTNGTVNNVAQEPVNTLGDISGNKTPDLSNQNSSDQANEEWETASESSDFNERR
1450 1460 1470 1480 1490 1500
1490 1500 1510 1520 1530
pF1KB0 VDLYQQASPPDALRWIPKPWERTGPPPREGPSRR--AEEPGSRGDKEPGLPPPR
.. . .: . . : : . :: :: .: ...: .: ... . ::.
CCDS12 ERDEKKNADLNA-QTVVKVGENVLPPKREIAKRSFSSQRPVDRQNRRGNNGPPKSGRNFS
1510 1520 1530 1540 1550 1560
CCDS12 GPRNERRSGPPSKSGKRGPFDDQPAGTTGVDLINGSSAHHQEGVPNGTGQKNSKDSTGKK
1570 1580 1590 1600 1610 1620
>>CCDS48044.1 PRRC2B gene_id:84726|Hs108|chr9 (2229 aa)
initn: 1423 init1: 521 opt: 894 Z-score: 356.8 bits: 79.3 E(32554): 1.5e-13
Smith-Waterman score: 1763; 37.3% identity (55.1% similar) in 1055 aa overlap (1-978:1-940)
10 20 30 40 50
pF1KB0 MSDRSGPTAKGKDGK-KYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPP
:::: : .:::::: :::.:.::: :::::.. . .: :::::::::::: :::::::
CCDS48 MSDRLGQITKGKDGKSKYSTLSLFDKYKGKSVDAIRSSVIPRHGLQSLGKVAAARRMPPP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 ANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPLESQPLPASQTPAS
:::::::.::::::::. .:::::::::.::.:.:::::.:...:: :: : :. : .:
CCDS48 ANLPSLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSATASQPPESLPQPGLQKSVS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 N-QPKRPPAAPENTPLVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGD
: : . ::: ::.: ::::: . .: : :.:: : :: ::::::.:::
CCDS48 NLQKPTQSISQENTNSVPGGPKSWAQLNGKPVGHEGGLRGSSRLLSFSPEEFPTLKAAGG
130 140 150 160 170 180
180 190 200 210 220
pF1KB0 QDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGR----------GPDELEGPDSKLHHG
::::.::. . : :::::::::: :.::.:::: .: :: . .:. :
CCDS48 QDKAGKEKGVLDLSYGPGPSLRPQNVTSWREGGGRHIISATSLSTSPTELGSRNSSTGDG
190 200 210 220 230 240
230 240 250 260
pF1KB0 ----------HDPRGGLQPSGP-----PQF------PP-YRGMMPPFMYPPYLP------
.:: .:.:. : :: :: :. :.: :: :
CCDS48 APSSACTSDSKDP--SLRPAQPVRKGASQFMGNVYHPPTYHDMLPAFMCSPKSSENQGTV
250 260 270 280 290
270 280 290 300 310
pF1KB0 ----FPPPY---GPQGPYR-YPTPDGPSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNL
:: : :. :.: . : .. :.. : : .::: . ::.:.. .::
CCDS48 ERGSFPLPQLRLEPRVPFRQFQMNDQDGKENRLGLSRPLRPLRQLVERAPRPTIINAENL
300 310 320 330 340 350
320 330 340 350 360 370
pF1KB0 KEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSDEEGAEGHRDSQSASGEERPPE
: .:.:: . :::::: ::::::.:::::::.:. .:: .. : . .. .: .
CCDS48 KGLDDLDADADDGWAGLHEEVDYSEKLKFSDDEE----EEEVVKDGRPKWNSWDPRRQRQ
360 370 380 390 400 410
380 390 400 410 420 430
pF1KB0 ADGKKGNSPNSEPPTPKTA-WAETSRPPETEPGPPAPKPPLPPPHRGPAGNWGPPGDYPD
. ....: ... . :::. .. : :.:: : .: :.: ::
CCDS48 LSMSSADSADAKRTREEGKDWAEAVGASRVVRKAPDPQPP-PRKLHG----WAPGPDYQK
420 430 440 450 460
440 450 460 470 480 490
pF1KB0 RG-GPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKL
. : . . ::... :.: .::.: ::::::.:::::::: .::: :::: ::
CCDS48 SSMGSMFRQQSIEDKEDKPPPRQKFIQSEMSEAVERARKRREEEERRAREERLAACAAKL
470 480 490 500 510 520
500 510 520 530 540 550
pF1KB0 KRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPKELPAPPAPPPASAPTPEKEPEEPA
:.::.: : .:. : .: .:. : :.: : . .::
CCDS48 KQLDQKCKQARKAGEARKQAEKEVPWSPSAEKASPQE-----NGPAVHKGSPEF------
530 540 550 560 570
560 570 580 590 600 610
pF1KB0 QAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVPPPTT
::: ::: :::. ::. : :.: : .:.
CCDS48 ---PAQETPTTFPEEAPTV-----------------SPAVAQSNSSE--EEAREA-----
580 590 600 610
620 630 640 650 660 670
pF1KB0 PPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQHQWQQHQQG
:. :.: . :::::::::::::::.: ::.: .:: :
CCDS48 ---------GS--------PAQEF---KYQKSLPPRFQRQQQQQ---QQEQLYKMQHWQ-
620 630 640
680 690 700 710 720 730
pF1KB0 SAPPTPVPPSPPQPVTLGAVPAPQAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYV
: : ::: :: ...:: . : : ..:::::::.: :.
CCDS48 --PVYP-PPSHPQ-----------------RTFYP----HHPQM--LGFDPRWMMMPSYM
650 660 670 680
740 750 760 770 780
pF1KB0 DPRLLQGRPPLDFYPPGVHPSGLV----PRERSDSGGSSSEPFDRHAPAMLRERGTPPVD
:::. : :.:::: ..:::::. :.: .. : :: :.. :.:: . :.:
CCDS48 DPRITPTRTPVDFYPSALHPSGLMKPMMPQESLNGTGCRSE--DQNCVPPLQERKVTPID
690 700 710 720 730
790 800 810 820 830 840
pF1KB0 PKLAWVGDVFTATPAEPRPLTSPLRQAADEDDKGMRSETPPVPPPPPSSSA-----VFR-
.: . . : .. :: : . . : .:.:. .... .:.
CCDS48 SPPVWSPEGYMALQSKGYPLPHPKSSDTLAMDMRVRNESSFSASLGRAGGVSAQRDLFEE
740 750 760 770 780 790
850 860 870 880
pF1KB0 ----------------LDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGPPQAPQ
.:. : :. : :. : . .. ::::: .. : :.
CCDS48 RGEEYLSAFDKKAQADFDSCISSQRIG-QELLFPPQENVQDAGAPGGHTQNLRCSPLEPD
800 810 820 830 840 850
890 900 910 920 930 940
pF1KB0 GPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGG-TPRDSAGVSPFPPKRRERPPRK
: . .:. . .: .: : . ..:: :::.... . . : ..
CCDS48 ----FVPDEKKPECGSWDVSHQP---ETADTAHGVERETPREGTAFNISSWDKNGSPNKQ
860 870 880 890 900 910
950 960 970 980 990 1000
pF1KB0 PELLQEESLPPPHSSGFLGSKPEGPGPQAESRDTGTEALTPHIWNRLHTATSRKSYRPSS
: . : : :.::. ...:: : ..: .:
CCDS48 PSS-EPEWTPEPRSSS--SQHPEQTG---RTRRSGPIKKPVLKALKVEDKEKELEKIKQE
920 930 940 950 960
1010 1020 1030 1040 1050 1060
pF1KB0 MEPWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKGAAEGPPKRP
CCDS48 LGEESTRLAKEKEQSPTAEKDEDEENDASLANSSTTTLEDKGPGHATFGREATKFEEEEK
970 980 990 1000 1010 1020
1533 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 11:36:28 2016 done: Thu Nov 3 11:36:29 2016
Total Scan time: 8.320 Total Display time: 0.360
Function used was FASTA [36.3.4 Apr, 2011]