FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0038, 389 aa
  1>>>pF1KB0038 389 - 389 aa - 389 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4014+/-0.000989; mu= 4.5809+/- 0.060
 mean_var=231.6085+/-46.426, 0's: 0 Z-trim(113.0): 68  B-trim: 9 in 1/50
 Lambda= 0.084275
 statistics sampled from 13634 (13690) to 13634 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.421), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(32554)
CCDS11765.1 CBX8 gene_id:57332|Hs108|chr17         ( 389) 2577 326.0 3.7e-89
CCDS13980.1 CBX6 gene_id:23466|Hs108|chr22         ( 412)  613 87.2 2.9e-17
CCDS77675.1 CBX6 gene_id:23466|Hs108|chr22         ( 394)  529 77.0 3.4e-14


>>CCDS11765.1 CBX8 gene_id:57332|Hs108|chr17              (389 aa)
 initn: 2577 init1: 2577 opt: 2577  Z-score: 1714.1  bits: 326.0 E(32554): 3.7e-89
Smith-Waterman score: 2577; 99.7% identity (99.7% similar) in 389 aa overlap (1-389:1-389)

               10        20        30        40        50        60
pF1KB0 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 EREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTSRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTSRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 REGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 REGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 GTSRVDDKPSSPGDSSKKRGPKPRKELPDPSQRPLGEPSAGLGEYLKGRKLDDTPSGAGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GTSRVDDKPSSPGDSSKKRGPKPRKELPDPSQRPLGEPSAGLGEYLKGRKLDDTPSGAGK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 FPAGHSVIQLARRQDSDLVQCGVTSPSSAEATGKLAVDTFPARVIKHRAAFLEAKGQGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FPAGHSVIQLARRQDSDLVQCGVTSPSSAEATGKLAVDTFPARVIKHRAAFLEAKGQGAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 DPNGTRVRHGSGPPSSVGGLYRDMGAQGGRPSLIARIPVARILGDPEEESWSPSLTNLEK
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS11 DPNGTRVRHGSGPPSSGGGLYRDMGAQGGRPSLIARIPVARILGDPEEESWSPSLTNLEK
              310       320       330       340       350       360

              370       380         
pF1KB0 VVVTDVTSNFLTVTIKESNTDQGFFKEKR
       :::::::::::::::::::::::::::::
CCDS11 VVVTDVTSNFLTVTIKESNTDQGFFKEKR
              370       380         

>>CCDS13980.1 CBX6 gene_id:23466|Hs108|chr22              (412 aa)
 initn: 683 init1: 517 opt: 613  Z-score: 423.3  bits: 87.2 E(32554): 2.9e-17
Smith-Waterman score: 625; 36.3% identity (54.9% similar) in 419 aa overlap (1-386:1-393)

               10        20        30        40        50        60
pF1KB0 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER
       ::::::::::::::...::::::::.:::::::::. :::::::::::::.::.::::..
CCDS13 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KB0 EREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQ--DLASTS
       ::: :::::::::::::::::::.:.:.:      ::   ...    . ::.  . :.. 
CCDS13 ERERELYGPKKRGPKPKTFLLKARAQAEALRI---SDVHFSVKPSASASSPKLHSSAAVH
               70        80        90          100       110       

      120                         130         140       150        
pF1KB0 RAREGLR------------------NMGLSPPAS--STSTSSTCRAEAPRDRDRDRD---
       : .. .:                  . :: :: :  : ..    :   ::.  :.:    
CCDS13 RLKKDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILN
       120       130       140       150       160       170       

          160       170       180       190       200           210
pF1KB0 -RDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRK----ELPDP
        .  ..        .      : .  . .::  : .. ..:  .   .  :     :  :
CCDS13 LKVIDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKP
       180       190       200       210       220       230       

              220       230       240       250       260       270
pF1KB0 SQRPLGEPSAGLGEYLKGRKLDDTPSGAGKFPAGHSVIQLARRQDSDLVQCGVTSPSSAE
          ::  :: :        : . .  : : . :. ..   :: . :.   :   .:.:..
CCDS13 PPAPLVAPSPG--------KAEASAPGPGLLLAAPAAPYDARSSGSS--GCPSPTPQSSD
       240               250       260       270         280       

              280       290       300       310       320          
pF1KB0 ATGKLAVDTFPARVIKHRAAFLEAKGQGALDPNGTRVRHGSGPPSSVGGLYR---DMGAQ
              :  : ... . ..    .. .  .:.   :   : :: :..   :   .. : 
CCDS13 P------DDTPPKLLPETVS---PSAPSWREPE---VLDLSLPPESAATSKRAPPEVTAA
             290       300          310          320       330     

       330       340       350       360       370       380       
pF1KB0 GGRPSLIARIPVARILGDPEEESWSPSLTNLEKVVVTDVTSNFLTVTIKESNTDQGFFKE
       .:     :  : :   ..::  .: : ..   .:::::::::.:::::::  . . : : 
CCDS13 AGPAPPTAPEP-AGASSEPEAGDWRPEMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKV
         340        350       360       370       380       390    

                         
pF1KB0 KR                
                         
CCDS13 AAGVAGAAGGGGSIGASK
          400       410  

>>CCDS77675.1 CBX6 gene_id:23466|Hs108|chr22              (394 aa)
 initn: 671 init1: 503 opt: 529  Z-score: 368.4  bits: 77.0 E(32554): 3.4e-14
Smith-Waterman score: 627; 37.2% identity (55.5% similar) in 409 aa overlap (1-386:1-375)

               10        20        30        40        50        60
pF1KB0 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER
       ::::::::::::::...::::::::.:::::::::. :::::::::::::.::.::::..
CCDS77 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK
               10        20        30        40        50        60

               70        80               90       100          110
pF1KB0 EREMELYGPKKRGPKPKTFLLKAQAKAK-------AKTYEFRSDSARGIRI---PYPGRS
       ::: :::::::::::::::::: .:.:.       : ......:  :  :.   : :  .
CCDS77 ERERELYGPKKRGPKPKTFLLKPSASASSPKLHSSAAVHRLKKDIRRCHRMSRRPLPRPD
               70        80        90       100       110       120

              120       130         140       150           160    
pF1KB0 PQDLASTSRAREGLRNMGLSPPAS--STSTSSTCRAEAPRDRDRDRD----RDRERDRER
       ::       .  :::     :: :  : ..    :   ::.  :.:     .  ..    
CCDS77 PQG------GSPGLR-----PPISPFSETVRIINRKVKPREPKRNRIILNLKVIDKGAGG
                         130       140       150       160         

          170       180       190       200           210       220
pF1KB0 ERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRK----ELPDPSQRPLGEPSA
           .      : .  . .::  : .. ..:  .   .  :     :  :   ::  :: 
CCDS77 GGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKPPPAPLVAPSP
     170       180       190       200       210       220         

              230       240       250       260       270       280
pF1KB0 GLGEYLKGRKLDDTPSGAGKFPAGHSVIQLARRQDSDLVQCGVTSPSSAEATGKLAVDTF
       :        : . .  : : . :. ..   :: . :.   :   .:.:..       :  
CCDS77 G--------KAEASAPGPGLLLAAPAAPYDARSSGSS--GCPSPTPQSSDP------DDT
     230               240       250         260       270         

              290       300       310       320          330       
pF1KB0 PARVIKHRAAFLEAKGQGALDPNGTRVRHGSGPPSSVGGLYR---DMGAQGGRPSLIARI
       : ... . ..    .. .  .:.   :   : :: :..   :   .. : .:     :  
CCDS77 PPKLLPETVS---PSAPSWREPE---VLDLSLPPESAATSKRAPPEVTAAAGPAPPTAPE
           280          290          300       310       320       

       340       350       360       370       380                 
pF1KB0 PVARILGDPEEESWSPSLTNLEKVVVTDVTSNFLTVTIKESNTDQGFFKEKR        
       : :   ..::  .: : ..   .:::::::::.:::::::  . . : :           
CCDS77 P-AGASSEPEAGDWRPEMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKVAAGVAGAAGG
        330       340       350       360       370       380      

CCDS77 GGSIGASK
        390    




389 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:21:16 2016 done: Thu Nov  3 20:21:17 2016
 Total Scan time:  3.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]