FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0011, 480 aa
  1>>>pF1KB0011 480 - 480 aa - 480 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.2474+/-0.000398; mu= -6.1274+/- 0.025
 mean_var=492.4863+/-105.095, 0's: 0 Z-trim(124.7): 25  B-trim: 4897 in 2/60
 Lambda= 0.057793
 statistics sampled from 46943 (46984) to 46943 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.551), width:  16
 Scan time: 11.770

The best scores are:                                      opt bits E(85289)
NP_077297 (OMIM: 613232) RNA-binding protein 42 is ( 480) 3272 287.0 7.7e-77
XP_005259314 (OMIM: 613232) PREDICTED: RNA-binding ( 473) 3210 281.9 2.7e-75
NP_001306042 (OMIM: 613232) RNA-binding protein 42 ( 451) 2121 191.0 5.7e-48


>>NP_077297 (OMIM: 613232) RNA-binding protein 42 isofor  (480 aa)
 initn: 3272 init1: 3272 opt: 3272  Z-score: 1500.5  bits: 287.0 E(85289): 7.7e-77
Smith-Waterman score: 3272; 100.0% identity (100.0% similar) in 480 aa overlap (1-480:1-480)

               10        20        30        40        50        60
pF1KB0 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR
              430       440       450       460       470       480

>>XP_005259314 (OMIM: 613232) PREDICTED: RNA-binding pro  (473 aa)
 initn: 2104 init1: 2104 opt: 3210  Z-score: 1472.7  bits: 281.9 E(85289): 2.7e-75
Smith-Waterman score: 3210; 98.5% identity (98.5% similar) in 480 aa overlap (1-480:1-473)

               10        20        30        40        50        60
pF1KB0 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP
       :::::::::::::::::::::::::::::::::::::::::::::::::       ::::
XP_005 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRA-------AAGP
              130       140       150       160              170   

              190       200       210       220       230       240
pF1KB0 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG
           180       190       200       210       220       230   

              250       260       270       280       290       300
pF1KB0 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL
           240       250       260       270       280       290   

              310       320       330       340       350       360
pF1KB0 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI
           300       310       320       330       340       350   

              370       380       390       400       410       420
pF1KB0 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK
           360       370       380       390       400       410   

              430       440       450       460       470       480
pF1KB0 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR
           420       430       440       450       460       470   

>>NP_001306042 (OMIM: 613232) RNA-binding protein 42 iso  (451 aa)
 initn: 2103 init1: 2103 opt: 2121  Z-score: 982.2  bits: 191.0 E(85289): 5.7e-48
Smith-Waterman score: 3018; 94.0% identity (94.0% similar) in 480 aa overlap (1-480:1-451)

               10        20        30        40        50        60
pF1KB0 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP
       ::::::::::::::::::::::::::::                             :::
NP_001 GPVGFGPGDRSHLDSPEAREAMFLRRAA-----------------------------AGP
              130       140                                    150 

              190       200       210       220       230       240
pF1KB0 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG
             160       170       180       190       200       210 

              250       260       270       280       290       300
pF1KB0 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL
             220       230       240       250       260       270 

              310       320       330       340       350       360
pF1KB0 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI
             280       290       300       310       320       330 

              370       380       390       400       410       420
pF1KB0 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK
             340       350       360       370       380       390 

              430       440       450       460       470       480
pF1KB0 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR
             400       410       420       430       440       450 




480 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:17:20 2016 done: Thu Nov  3 20:17:22 2016
 Total Scan time: 11.770 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]