FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0011, 480 aa
  1>>>pF1KB0011 480 - 480 aa - 480 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.7785+/-0.000964; mu= -9.1215+/- 0.058
 mean_var=442.7206+/-91.225, 0's: 0 Z-trim(117.0): 17  B-trim: 0 in 0/53
 Lambda= 0.060955
 statistics sampled from 17722 (17737) to 17722 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.545), width:  16
 Scan time:  4.260

The best scores are:                                      opt bits E(32554)
CCDS12468.1 RBM42 gene_id:79171|Hs108|chr19        ( 480) 3272 301.7 1.2e-81


>>CCDS12468.1 RBM42 gene_id:79171|Hs108|chr19             (480 aa)
 initn: 3272 init1: 3272 opt: 3272  Z-score: 1579.6  bits: 301.7 E(32554): 1.2e-81
Smith-Waterman score: 3272; 100.0% identity (100.0% similar) in 480 aa overlap (1-480:1-480)

               10        20        30        40        50        60
pF1KB0 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR
              430       440       450       460       470       480




480 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:17:19 2016 done: Thu Nov  3 20:17:20 2016
 Total Scan time:  4.260 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]