FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA2021, 636 aa
  1>>>pF1KA2021 636 - 636 aa - 636 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3327+/-0.000752; mu= 17.2000+/- 0.046
 mean_var=122.7065+/-24.034, 0's: 0 Z-trim(113.0): 8  B-trim: 0 in 0/51
 Lambda= 0.115782
 statistics sampled from 13695 (13699) to 13695 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.421), width:  16
 Scan time:  3.360

The best scores are:                                      opt bits E(32554)
CCDS9624.1 NOP9 gene_id:161424|Hs108|chr14         ( 636) 4180 709.2 4.2e-204
CCDS66616.1 NOP9 gene_id:161424|Hs108|chr14        ( 535) 3436 584.9 9.5e-167


>>CCDS9624.1 NOP9 gene_id:161424|Hs108|chr14              (636 aa)
 initn: 4180 init1: 4180 opt: 4180  Z-score: 3777.8  bits: 709.2 E(32554): 4.2e-204
Smith-Waterman score: 4180; 100.0% identity (100.0% similar) in 636 aa overlap (1-636:1-636)

               10        20        30        40        50        60
pF1KA2 MGQGPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MGQGPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA2 ALGYFRRALSALKEAPETGEERDLMVHNIMKEVETQALALSTNRTGSEMLQELLGFSPLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ALGYFRRALSALKEAPETGEERDLMVHNIMKEVETQALALSTNRTGSEMLQELLGFSPLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA2 PLCRVWAALRSNLRTVACHRCGVHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTETLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 PLCRVWAALRSNLRTVACHRCGVHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTETLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA2 ELVLGLAAEVCDDFLVYCGDTHGSFVVRTLLQVLGGTILESERARPRGSQSSEAQKTPAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ELVLGLAAEVCDDFLVYCGDTHGSFVVRTLLQVLGGTILESERARPRGSQSSEAQKTPAQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA2 ECKPADFEVPETFLNRLQDLSSSFLKDIAVFITDKISSFCLQVALQVLHRKLPQFCAHLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ECKPADFEVPETFLNRLQDLSSSFLKDIAVFITDKISSFCLQVALQVLHRKLPQFCAHLC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA2 NAVIGYLSTRGSSVDGSPLLLFLRDQTSSRLLEQVLLVLEPPRLQSLFEEHLQGQLQTLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 NAVIGYLSTRGSSVDGSPLLLFLRDQTSSRLLEQVLLVLEPPRLQSLFEEHLQGQLQTLA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA2 AHPIANFPLQRLLDAVTTPELLSPVFEELSPVLEAVLAQGHPGVVIALVGACRRVGAYQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 AHPIANFPLQRLLDAVTTPELLSPVFEELSPVLEAVLAQGHPGVVIALVGACRRVGAYQA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA2 KVLQLLLEAFHCAEPSSRQVACVPLFATLMAYEVYYGLTEEEGAVPAEHQVAMAAARALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KVLQLLLEAFHCAEPSSRQVACVPLFATLMAYEVYYGLTEEEGAVPAEHQVAMAAARALG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA2 DVTVLGSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 DVTVLGSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA2 RRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 RRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHV
              550       560       570       580       590       600

              610       620       630      
pF1KA2 ARNVALTTFLKRREAWEQQQGAVAKRRRALNSILED
       ::::::::::::::::::::::::::::::::::::
CCDS96 ARNVALTTFLKRREAWEQQQGAVAKRRRALNSILED
              610       620       630      

>>CCDS66616.1 NOP9 gene_id:161424|Hs108|chr14             (535 aa)
 initn: 3468 init1: 3435 opt: 3436  Z-score: 3107.1  bits: 584.9 E(32554): 9.5e-167
Smith-Waterman score: 3436; 99.1% identity (99.4% similar) in 527 aa overlap (1-527:1-526)

               10        20        30        40        50        60
pF1KA2 MGQGPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MGQGPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA2 ALGYFRRALSALKEAPETGEERDLMVHNIMKEVETQALALSTNRTGSEMLQELLGFSPLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ALGYFRRALSALKEAPETGEERDLMVHNIMKEVETQALALSTNRTGSEMLQELLGFSPLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA2 PLCRVWAALRSNLRTVACHRCGVHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTETLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 PLCRVWAALRSNLRTVACHRCGVHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTETLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA2 ELVLGLAAEVCDDFLVYCGDTHGSFVVRTLLQVLGGTILESERARPRGSQSSEAQKTPAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ELVLGLAAEVCDDFLVYCGDTHGSFVVRTLLQVLGGTILESERARPRGSQSSEAQKTPAQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA2 ECKPADFEVPETFLNRLQDLSSSFLKDIAVFITDKISSFCLQVALQVLHRKLPQFCAHLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ECKPADFEVPETFLNRLQDLSSSFLKDIAVFITDKISSFCLQVALQVLHRKLPQFCAHLC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA2 NAVIGYLSTRGSSVDGSPLLLFLRDQTSSRLLEQVLLVLEPPRLQSLFEEHLQGQLQTLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NAVIGYLSTRGSSVDGSPLLLFLRDQTSSRLLEQVLLVLEPPRLQSLFEEHLQGQLQTLA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA2 AHPIANFPLQRLLDAVTTPELLSPVFEELSPVLEAVLAQGHPGVVIALVGACRRVGAYQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 AHPIANFPLQRLLDAVTTPELLSPVFEELSPVLEAVLAQGHPGVVIALVGACRRVGAYQA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA2 KVLQLLLEAFHCAEPSSRQVACVPLFATLMAYEVYYGLTEEEGAVPAEHQVAMAAARALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KVLQLLLEAFHCAEPSSRQVACVPLFATLMAYEVYYGLTEEEGAVPAEHQVAMAAARALG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA2 DVTVLGSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKL
       ::::::::::::::::::::::::::::::::::::::: : : ..:             
CCDS66 DVTVLGSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQRP-GRKLLLSLGSRTRS    
              490       500       510       520        530         

              550       560       570       580       590       600
pF1KA2 RRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHV




636 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:25:31 2016 done: Wed Nov  2 22:25:32 2016
 Total Scan time:  3.360 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]