Result of FASTA (ccds) for
pF1KA1996
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1996, 416 aa
1>>>pF1KA1996 416 - 416 aa - 416 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5258+/-0.000908; mu= 13.1339+/- 0.055
mean_var=116.5472+/-22.557, 0's: 0 Z-trim(109.5): 17 B-trim: 0 in 0/50
Lambda= 0.118802
statistics sampled from 10928 (10938) to 10928 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.336), width: 16
Scan time: 3.030
The best scores are: opt bits E(32554)
CCDS76290.1 ACBD5 gene_id:91452|Hs108|chr10 ( 416) 2760 483.9 1.2e-136
CCDS7154.1 ACBD5 gene_id:91452|Hs108|chr10 ( 490) 2760 483.9 1.4e-136
CCDS73079.1 ACBD5 gene_id:91452|Hs108|chr10 ( 523) 2760 483.9 1.5e-136
CCDS44368.1 ACBD5 gene_id:91452|Hs108|chr10 ( 525) 2760 483.9 1.5e-136
>>CCDS76290.1 ACBD5 gene_id:91452|Hs108|chr10 (416 aa)
initn: 2760 init1: 2760 opt: 2760 Z-score: 2566.5 bits: 483.9 E(32554): 1.2e-136
Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 416 aa overlap (1-416:1-416)
10 20 30 40 50 60
pF1KA1 MTKEEAMIAYVEEMKKIIETMPMTEKVEELLRVIGPFYEIVEDKKSGRSSDITSDLGNVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MTKEEAMIAYVEEMKKIIETMPMTEKVEELLRVIGPFYEIVEDKKSGRSSDITSDLGNVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 TSTPNAKTVNGKAESSDSGAESEEEEAQEEVKGAEQSDNDKKMMKKSADHKNLEVIVTNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 TSTPNAKTVNGKAESSDSGAESEEEEAQEEVKGAEQSDNDKKMMKKSADHKNLEVIVTNG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 YDKDGFVQDIQNDIHASSSLNGRSTEEVKPIDENLGQTGKSAVCIHQDINDDHVEDVTGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 YDKDGFVQDIQNDIHASSSLNGRSTEEVKPIDENLGQTGKSAVCIHQDINDDHVEDVTGI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 QHLTSDSDSEVYCDSMEQFGQEESLDSFTSNNGPFQYYLGGHSSQPMENSGFREDIQVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QHLTSDSDSEVYCDSMEQFGQEESLDSFTSNNGPFQYYLGGHSSQPMENSGFREDIQVPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 GNGNIGNMQVVAVEGKGEVKHGGEDGRNNSGAPHREKRGGETDEFSNVRRGRGHRMQHLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GNGNIGNMQVVAVEGKGEVKHGGEDGRNNSGAPHREKRGGETDEFSNVRRGRGHRMQHLS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 EGTKGRQVGSGGDGERWGSDRGSRGSLNEQIALVLMRLQEDMQNVLQRLQKLETLTALQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 EGTKGRQVGSGGDGERWGSDRGSRGSLNEQIALVLMRLQEDMQNVLQRLQKLETLTALQA
310 320 330 340 350 360
370 380 390 400 410
pF1KA1 KSSTSTLQTAPQPTSQRPSWWPFEMSPGVLTFAIIWPFIAQWLVYLYYQRRRRKLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KSSTSTLQTAPQPTSQRPSWWPFEMSPGVLTFAIIWPFIAQWLVYLYYQRRRRKLN
370 380 390 400 410
>>CCDS7154.1 ACBD5 gene_id:91452|Hs108|chr10 (490 aa)
initn: 2760 init1: 2760 opt: 2760 Z-score: 2565.5 bits: 483.9 E(32554): 1.4e-136
Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 416 aa overlap (1-416:75-490)
10 20 30
pF1KA1 MTKEEAMIAYVEEMKKIIETMPMTEKVEEL
::::::::::::::::::::::::::::::
CCDS71 ATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVEEL
50 60 70 80 90 100
40 50 60 70 80 90
pF1KA1 LRVIGPFYEIVEDKKSGRSSDITSDLGNVLTSTPNAKTVNGKAESSDSGAESEEEEAQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 LRVIGPFYEIVEDKKSGRSSDITSDLGNVLTSTPNAKTVNGKAESSDSGAESEEEEAQEE
110 120 130 140 150 160
100 110 120 130 140 150
pF1KA1 VKGAEQSDNDKKMMKKSADHKNLEVIVTNGYDKDGFVQDIQNDIHASSSLNGRSTEEVKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 VKGAEQSDNDKKMMKKSADHKNLEVIVTNGYDKDGFVQDIQNDIHASSSLNGRSTEEVKP
170 180 190 200 210 220
160 170 180 190 200 210
pF1KA1 IDENLGQTGKSAVCIHQDINDDHVEDVTGIQHLTSDSDSEVYCDSMEQFGQEESLDSFTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 IDENLGQTGKSAVCIHQDINDDHVEDVTGIQHLTSDSDSEVYCDSMEQFGQEESLDSFTS
230 240 250 260 270 280
220 230 240 250 260 270
pF1KA1 NNGPFQYYLGGHSSQPMENSGFREDIQVPPGNGNIGNMQVVAVEGKGEVKHGGEDGRNNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 NNGPFQYYLGGHSSQPMENSGFREDIQVPPGNGNIGNMQVVAVEGKGEVKHGGEDGRNNS
290 300 310 320 330 340
280 290 300 310 320 330
pF1KA1 GAPHREKRGGETDEFSNVRRGRGHRMQHLSEGTKGRQVGSGGDGERWGSDRGSRGSLNEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 GAPHREKRGGETDEFSNVRRGRGHRMQHLSEGTKGRQVGSGGDGERWGSDRGSRGSLNEQ
350 360 370 380 390 400
340 350 360 370 380 390
pF1KA1 IALVLMRLQEDMQNVLQRLQKLETLTALQAKSSTSTLQTAPQPTSQRPSWWPFEMSPGVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 IALVLMRLQEDMQNVLQRLQKLETLTALQAKSSTSTLQTAPQPTSQRPSWWPFEMSPGVL
410 420 430 440 450 460
400 410
pF1KA1 TFAIIWPFIAQWLVYLYYQRRRRKLN
::::::::::::::::::::::::::
CCDS71 TFAIIWPFIAQWLVYLYYQRRRRKLN
470 480 490
>>CCDS73079.1 ACBD5 gene_id:91452|Hs108|chr10 (523 aa)
initn: 2760 init1: 2760 opt: 2760 Z-score: 2565.1 bits: 483.9 E(32554): 1.5e-136
Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 416 aa overlap (1-416:108-523)
10 20 30
pF1KA1 MTKEEAMIAYVEEMKKIIETMPMTEKVEEL
::::::::::::::::::::::::::::::
CCDS73 ATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVEEL
80 90 100 110 120 130
40 50 60 70 80 90
pF1KA1 LRVIGPFYEIVEDKKSGRSSDITSDLGNVLTSTPNAKTVNGKAESSDSGAESEEEEAQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LRVIGPFYEIVEDKKSGRSSDITSDLGNVLTSTPNAKTVNGKAESSDSGAESEEEEAQEE
140 150 160 170 180 190
100 110 120 130 140 150
pF1KA1 VKGAEQSDNDKKMMKKSADHKNLEVIVTNGYDKDGFVQDIQNDIHASSSLNGRSTEEVKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VKGAEQSDNDKKMMKKSADHKNLEVIVTNGYDKDGFVQDIQNDIHASSSLNGRSTEEVKP
200 210 220 230 240 250
160 170 180 190 200 210
pF1KA1 IDENLGQTGKSAVCIHQDINDDHVEDVTGIQHLTSDSDSEVYCDSMEQFGQEESLDSFTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IDENLGQTGKSAVCIHQDINDDHVEDVTGIQHLTSDSDSEVYCDSMEQFGQEESLDSFTS
260 270 280 290 300 310
220 230 240 250 260 270
pF1KA1 NNGPFQYYLGGHSSQPMENSGFREDIQVPPGNGNIGNMQVVAVEGKGEVKHGGEDGRNNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NNGPFQYYLGGHSSQPMENSGFREDIQVPPGNGNIGNMQVVAVEGKGEVKHGGEDGRNNS
320 330 340 350 360 370
280 290 300 310 320 330
pF1KA1 GAPHREKRGGETDEFSNVRRGRGHRMQHLSEGTKGRQVGSGGDGERWGSDRGSRGSLNEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GAPHREKRGGETDEFSNVRRGRGHRMQHLSEGTKGRQVGSGGDGERWGSDRGSRGSLNEQ
380 390 400 410 420 430
340 350 360 370 380 390
pF1KA1 IALVLMRLQEDMQNVLQRLQKLETLTALQAKSSTSTLQTAPQPTSQRPSWWPFEMSPGVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IALVLMRLQEDMQNVLQRLQKLETLTALQAKSSTSTLQTAPQPTSQRPSWWPFEMSPGVL
440 450 460 470 480 490
400 410
pF1KA1 TFAIIWPFIAQWLVYLYYQRRRRKLN
::::::::::::::::::::::::::
CCDS73 TFAIIWPFIAQWLVYLYYQRRRRKLN
500 510 520
>>CCDS44368.1 ACBD5 gene_id:91452|Hs108|chr10 (525 aa)
initn: 2760 init1: 2760 opt: 2760 Z-score: 2565.0 bits: 483.9 E(32554): 1.5e-136
Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 416 aa overlap (1-416:110-525)
10 20 30
pF1KA1 MTKEEAMIAYVEEMKKIIETMPMTEKVEEL
::::::::::::::::::::::::::::::
CCDS44 ATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVEEL
80 90 100 110 120 130
40 50 60 70 80 90
pF1KA1 LRVIGPFYEIVEDKKSGRSSDITSDLGNVLTSTPNAKTVNGKAESSDSGAESEEEEAQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LRVIGPFYEIVEDKKSGRSSDITSDLGNVLTSTPNAKTVNGKAESSDSGAESEEEEAQEE
140 150 160 170 180 190
100 110 120 130 140 150
pF1KA1 VKGAEQSDNDKKMMKKSADHKNLEVIVTNGYDKDGFVQDIQNDIHASSSLNGRSTEEVKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VKGAEQSDNDKKMMKKSADHKNLEVIVTNGYDKDGFVQDIQNDIHASSSLNGRSTEEVKP
200 210 220 230 240 250
160 170 180 190 200 210
pF1KA1 IDENLGQTGKSAVCIHQDINDDHVEDVTGIQHLTSDSDSEVYCDSMEQFGQEESLDSFTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IDENLGQTGKSAVCIHQDINDDHVEDVTGIQHLTSDSDSEVYCDSMEQFGQEESLDSFTS
260 270 280 290 300 310
220 230 240 250 260 270
pF1KA1 NNGPFQYYLGGHSSQPMENSGFREDIQVPPGNGNIGNMQVVAVEGKGEVKHGGEDGRNNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NNGPFQYYLGGHSSQPMENSGFREDIQVPPGNGNIGNMQVVAVEGKGEVKHGGEDGRNNS
320 330 340 350 360 370
280 290 300 310 320 330
pF1KA1 GAPHREKRGGETDEFSNVRRGRGHRMQHLSEGTKGRQVGSGGDGERWGSDRGSRGSLNEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GAPHREKRGGETDEFSNVRRGRGHRMQHLSEGTKGRQVGSGGDGERWGSDRGSRGSLNEQ
380 390 400 410 420 430
340 350 360 370 380 390
pF1KA1 IALVLMRLQEDMQNVLQRLQKLETLTALQAKSSTSTLQTAPQPTSQRPSWWPFEMSPGVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IALVLMRLQEDMQNVLQRLQKLETLTALQAKSSTSTLQTAPQPTSQRPSWWPFEMSPGVL
440 450 460 470 480 490
400 410
pF1KA1 TFAIIWPFIAQWLVYLYYQRRRRKLN
::::::::::::::::::::::::::
CCDS44 TFAIIWPFIAQWLVYLYYQRRRRKLN
500 510 520
416 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:00:05 2016 done: Sat Nov 5 07:00:06 2016
Total Scan time: 3.030 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]