FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1893, 798 aa
  1>>>pF1KA1893 798 - 798 aa - 798 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.4355+/-0.00106; mu= -5.9567+/- 0.064
 mean_var=362.3707+/-73.620, 0's: 0 Z-trim(114.0): 72  B-trim: 66 in 1/52
 Lambda= 0.067375
 statistics sampled from 14507 (14565) to 14507 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.447), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS4405.1 GPRIN1 gene_id:114787|Hs108|chr5        (1008) 5023 502.7 1.2e-141


>>CCDS4405.1 GPRIN1 gene_id:114787|Hs108|chr5             (1008 aa)
 initn: 4989 init1: 4989 opt: 5023  Z-score: 2656.5  bits: 502.7 E(32554): 1.2e-141
Smith-Waterman score: 5023; 96.1% identity (97.3% similar) in 789 aa overlap (1-788:1-788)

               10        20        30        40        50        60
pF1KA1 MDTAEDPAWLQLLQKDSSPPGPRPTAFFCPQDGSLGAGSSAMRDYCPSQQKASPAPPRHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MDTAEDPAWLQLLQKDSSPPGPRPTAFFCPQDGSLGAGSSAMRDYCPSQQKASPAPPRHT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 PDQSPGMESRHRSPSGAGEGASCSDGPRGSLACPSPTCFSPQESPSKETLEAHGASISGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PDQSPGMESRHRSPSGAGEGASCSDGPRGSLACPSPTCFSPQESPSKETLEAHGASISGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 PEATTSGKPEPVSSVKTEPKSSDDRNPMFLEKMDFKSSKQADSTSIGKEDPGSSRKADPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PEATTSGKPEPVSSVKTEPKSSDDRNPMFLEKMDFKSSKQADSTSIGKEDPGSSRKADPM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 FTGKAEPEILGKGDPVAPGRMDPMTVRKEDLGSLGKVDPLCSSKTYTVSPRKEDPGSLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FTGKAEPEILGKGDPVAPGRMDPMTVRKEDLGSLGKVDPLCSSKTYTVSPRKEDPGSLRK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 VDPVSSDKVDPVFPRKEEPRYSGKEHPVSSEKVAPTSAEKVDLVLSGKRDPGPSGKADPV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS44 VDPVSSDKVDPVFPRKEEPRYSGKEHPVSSEKVAPTSAEKVDLVLSGKRDPGPSGKADPM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 PLESMDSASTGKTEPGLLGKLIPGSSGKNGPVSSGTGAPGSLGRLDPTCLGMADPASVGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PLESMDSASTGKTEPGLLGKLIPGSSGKNGPVSSGTGAPGSLGRLDPTCLGMADPASVGN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 VETVPATKEDSRFLGKMDPASSGEGRPVSGHTDTTASAKTDLTSLKNVDPMSSGKVDPVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VETVPATKEDSRFLGKMDPASSGEGRPVSGHTDTTASAKTDLTSLKNVDPMSSGKVDPVS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 LGKMDPMCSGKPELLSPGQAERVSVGKAGTVSPGKEDPVSSRREDPISAGSRKTSSEKVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LGKMDPMCSGKPELLSPGQAERVSVGKAGTVSPGKEDPVSSRREDPISAGSRKTSSEKVN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 PESSGKTNPVSSGPGDPRSLGTAGPPSAVKAEPATGGKGDPLSSEKAGLVASGKAAPTAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PESSGKTNPVSSGPGDPRSLGTAGPPSAVKAEPATGGKGDPLSSEKAGLVASGKAAPTAS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 GKAEPLAVGKEDPVSKGKADAGPSGQGDSVSIGKVVSTPGKTVPVPSGKVDPVSLGKAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GKAEPLAVGKEDPVSKGKADAGPSGQGDSVSIGKVVSTPGKTVPVPSGKVDPVSLGKAEA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 IPEGKVGSLPLEKGSPVTTTKADPRASGKAQPQSGGKAETKLPGQEGAAAPGEAGAVCLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IPEGKVGSLPLEKGSPVTTTKADPRASGKAQPQSGGKAETKLPGQEGAAAPGEAGAVCLK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 KETPQASEKVDPGSCRKAEPLASGKGEPVSLGKADSAPSRKTESPSLGKVVPLSLEKTKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KETPQASEKVDPGSCRKAEPLASGKGEPVSLGKADSAPSRKTESPSLGKVVPLSLEKTKP
              670       680       690       700       710       720

              730       740        750       760       770         
pF1KA1 SSSSRQLDRKALGSARSPEGARGSEGR-QASARPVPRAAAECAPAAVLLAGGTHGRVICP
       ::::::::::::::::::::::::::: . .:.::  . :       : :.:.. :  ::
CCDS44 SSSSRQLDRKALGSARSPEGARGSEGRVEPKAEPVSSTEASSLGQKDLEAAGAE-RSPCP
              730       740       750       760       770          

     780       790                                                 
pF1KA1 HFVRPSFRPSQAPFLITGP                                         
       . . :   :                                                   
CCDS44 EAAAPPPGPRTRDNFTKAPSWEASAPPPPREDAGTQAGAQACVSVAVSPMSPQDGAGGSA
     780       790       800       810       820       830         




798 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:15:27 2016 done: Wed Nov  2 22:15:28 2016
 Total Scan time:  3.390 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]