FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1839, 517 aa
  1>>>pF1KA1839 517 - 517 aa - 517 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6150+/-0.000874; mu= 5.5077+/- 0.054
 mean_var=212.6284+/-42.407, 0's: 0 Z-trim(114.3): 11  B-trim: 0 in 0/54
 Lambda= 0.087956
 statistics sampled from 14843 (14852) to 14843 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.456), width:  16
 Scan time:  4.040

The best scores are:                                      opt bits E(32554)
CCDS781.1 RNPC3 gene_id:55599|Hs108|chr1           ( 517) 3473 453.2 3.3e-127


>>CCDS781.1 RNPC3 gene_id:55599|Hs108|chr1                (517 aa)
 initn: 3473 init1: 3473 opt: 3473  Z-score: 2397.2  bits: 453.2 E(32554): 3.3e-127
Smith-Waterman score: 3473; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KA1 MAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 KGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 SDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 KFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEELS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 SEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 HPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 HPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 GFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAA
              430       440       450       460       470       480

              490       500       510       
pF1KA1 KALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRKC
       :::::::::::::::::::::::::::::::::::::
CCDS78 KALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRKC
              490       500       510       




517 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:52:42 2016 done: Fri Nov  4 01:52:43 2016
 Total Scan time:  4.040 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]