FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1826, 345 aa
  1>>>pF1KA1826 345 - 345 aa - 345 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8578+/-0.00128; mu= -3.7071+/- 0.076
 mean_var=297.5073+/-61.495, 0's: 0 Z-trim(109.3): 44  B-trim: 87 in 1/49
 Lambda= 0.074358
 statistics sampled from 10806 (10821) to 10806 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.332), width:  16
 Scan time:  2.780

The best scores are:                                      opt bits E(32554)
CCDS31663.1 MSANTD4 gene_id:84437|Hs108|chr11      ( 345) 2217 251.3 8.5e-67


>>CCDS31663.1 MSANTD4 gene_id:84437|Hs108|chr11           (345 aa)
 initn: 2217 init1: 2217 opt: 2217  Z-score: 1312.7  bits: 251.3 E(32554): 8.5e-67
Smith-Waterman score: 2217; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)

               10        20        30        40        50        60
pF1KA1 MKQLKRKRKSNFSVQETQTLLKEITKRKEVIFSKQLNTTINVMKRMAWEEIAQCVNAVGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MKQLKRKRKSNFSVQETQTLLKEITKRKEVIFSKQLNTTINVMKRMAWEEIAQCVNAVGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 GEQRTGTEVKRRYLDWRALMKRKRMKANIKLVGSGFPLPSSDLDDSLTEEIDEKIGFRND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GEQRTGTEVKRRYLDWRALMKRKRMKANIKLVGSGFPLPSSDLDDSLTEEIDEKIGFRND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 ANFDWQNVADFRDAGGSLTEVKVEEEERDPQSPEFEIEEEEEMLSSVIPDSRRENELPDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ANFDWQNVADFRDAGGSLTEVKVEEEERDPQSPEFEIEEEEEMLSSVIPDSRRENELPDF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 PHIDEFFTLNSTPSRSAYDEPHLLVNIEKQKLELEKRRLDIEAERLQVEKERLQIEKERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PHIDEFFTLNSTPSRSAYDEPHLLVNIEKQKLELEKRRLDIEAERLQVEKERLQIEKERL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 RHLDMEHERLQLEKERLQIEREKLRLQIVNSEKPSLENELGQGEKSMLQPQDIETEKLKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RHLDMEHERLQLEKERLQIEREKLRLQIVNSEKPSLENELGQGEKSMLQPQDIETEKLKL
              250       260       270       280       290       300

              310       320       330       340     
pF1KA1 ERERLQLEKDRLQFLKFESEKLQIEKERLQVEKDRLRIQKEGHLQ
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ERERLQLEKDRLQFLKFESEKLQIEKERLQVEKDRLRIQKEGHLQ
              310       320       330       340     




345 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:05:26 2016 done: Wed Nov  2 22:05:26 2016
 Total Scan time:  2.780 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]