FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1796, 376 aa
  1>>>pF1KA1796 376 - 376 aa - 376 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4236+/-0.000907; mu= 15.8713+/- 0.055
 mean_var=62.4022+/-12.456, 0's: 0 Z-trim(105.1): 31  B-trim: 5 in 2/51
 Lambda= 0.162358
 statistics sampled from 8220 (8232) to 8220 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.253), width:  16
 Scan time:  2.340

The best scores are:                                      opt bits E(32554)
CCDS7254.1 PHYHIPL gene_id:84457|Hs108|chr10       ( 376) 2540 603.6  9e-173
CCDS44405.1 PHYHIPL gene_id:84457|Hs108|chr10      ( 350) 2304 548.3 3.7e-156
CCDS43723.1 PHYHIP gene_id:9796|Hs108|chr8         ( 330) 1782 426.1 2.2e-119


>>CCDS7254.1 PHYHIPL gene_id:84457|Hs108|chr10            (376 aa)
 initn: 2540 init1: 2540 opt: 2540  Z-score: 3215.3  bits: 603.6 E(32554): 9e-173
Smith-Waterman score: 2540; 99.7% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KA1 MEVPRLDHALNSPTSPCEEVIKNLSLEAIQLCDRDGNKSQDSGIAEMEELPVPHNIKISN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MEVPRLDHALNSPTSPCEEVIKNLSLEAIQLCDRDGNKSQDSGIAEMEELPVPHNIKISN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 ITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 ITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 HWFLSPRTEYTVAVQTASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKAEVIAGRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 HWFLSPRTEYTVAVQTASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKAEVIAGRM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LKFSVFYRNQHKEYFDYVREHHGNAMQPSVKDNSGSHGSPISGKLEGIFFSCSTEFNTGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LKFSVFYRNQHKEYFDYVREHHGNAMQPSVKDNSGSHGSPISGKLEGIFFSCSTEFNTGK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 PPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 PQLNSKDNKFLTCTEEDGVLVYHHAQDVILEVIYTDPVDLSLGTVAEITGHQLMSLSTAN
       :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS72 PQLNSKDNKFLTCTEEDGVLVYHHAQDVILEVIYTDPVDLSVGTVAEITGHQLMSLSTAN
              310       320       330       340       350       360

              370      
pF1KA1 AKKDPSCKTCNISVGR
       ::::::::::::::::
CCDS72 AKKDPSCKTCNISVGR
              370      

>>CCDS44405.1 PHYHIPL gene_id:84457|Hs108|chr10           (350 aa)
 initn: 2295 init1: 2295 opt: 2304  Z-score: 2917.0  bits: 548.3 E(32554): 3.7e-156
Smith-Waterman score: 2304; 98.3% identity (98.6% similar) in 348 aa overlap (32-376:3-350)

              10        20        30           40        50        
pF1KA1 EVPRLDHALNSPTSPCEEVIKNLSLEAIQLCDRD---GNKSQDSGIAEMEELPVPHNIKI
                                     :: :    ::::::::::::::::::::::
CCDS44                             MCCDSDFVARNKSQDSGIAEMEELPVPHNIKI
                                           10        20        30  

       60        70        80        90       100       110        
pF1KA1 SNITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SNITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTV
             40        50        60        70        80        90  

      120       130       140       150       160       170        
pF1KA1 RGHWFLSPRTEYTVAVQTASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKAEVIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RGHWFLSPRTEYTVAVQTASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKAEVIAG
            100       110       120       130       140       150  

      180       190       200       210       220       230        
pF1KA1 RMLKFSVFYRNQHKEYFDYVREHHGNAMQPSVKDNSGSHGSPISGKLEGIFFSCSTEFNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RMLKFSVFYRNQHKEYFDYVREHHGNAMQPSVKDNSGSHGSPISGKLEGIFFSCSTEFNT
            160       170       180       190       200       210  

      240       250       260       270       280       290        
pF1KA1 GKPPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GKPPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQ
            220       230       240       250       260       270  

      300       310       320       330       340       350        
pF1KA1 RLPQLNSKDNKFLTCTEEDGVLVYHHAQDVILEVIYTDPVDLSLGTVAEITGHQLMSLST
       :::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS44 RLPQLNSKDNKFLTCTEEDGVLVYHHAQDVILEVIYTDPVDLSVGTVAEITGHQLMSLST
            280       290       300       310       320       330  

      360       370      
pF1KA1 ANAKKDPSCKTCNISVGR
       ::::::::::::::::::
CCDS44 ANAKKDPSCKTCNISVGR
            340       350

>>CCDS43723.1 PHYHIP gene_id:9796|Hs108|chr8              (330 aa)
 initn: 1782 init1: 1782 opt: 1782  Z-score: 2256.6  bits: 426.1 E(32554): 2.2e-119
Smith-Waterman score: 1782; 76.4% identity (92.1% similar) in 330 aa overlap (47-376:1-330)

         20        30        40        50        60        70      
pF1KA1 CEEVIKNLSLEAIQLCDRDGNKSQDSGIAEMEELPVPHNIKISNITCDSFKISWEMDSKS
                                     :: : .::.:.:.:::::::.::: :....
CCDS43                               MELLSTPHSIEINNITCDSFRISWAMEDSD
                                             10        20        30

         80        90       100       110       120       130      
pF1KA1 KDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQT
        .:.::::::::::::::::::::.:::::::::::::::::::::::::::::.:::::
CCDS43 LERVTHYFIDLNKKENKNSNKFKHRDVPTKLVAKAVPLPMTVRGHWFLSPRTEYSVAVQT
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KA1 ASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKAEVIAGRMLKFSVFYRNQHKEYFD
       : :: ::.:.:: ::: .::::.::.: ::.:: :::: ::::::.:::::::.:::::.
CCDS43 AVKQSDGEYLVSGWSETVEFCTGDYAKEHLAQLQEKAEQIAGRMLRFSVFYRNHHKEYFQ
              100       110       120       130       140       150

        200       210       220       230       240       250      
pF1KA1 YVREHHGNAMQPSVKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAA
       ..: : :: .:: .:::::::::: :: :.:.::::.::::::.:::::::::.::.: :
CCDS43 HARTHCGNMLQPYLKDNSGSHGSPTSGMLHGVFFSCNTEFNTGQPPQDSPYGRWRFQIPA
              160       170       180       190       200       210

        260       270       280       290       300       310      
pF1KA1 EKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEE
       ..::::.:::::.:::::::::::.:::.:: :: ::.::..::: :.   ::::::. :
CCDS43 QRLFNPSTNLYFADFYCMYTAYHYAILVLAPKGSLGDRFCRDRLPLLDIACNKFLTCSVE
              220       230       240       250       260       270

        320       330       340       350       360       370      
pF1KA1 DGVLVYHHAQDVILEVIYTDPVDLSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR
       :: ::..::::.:::.:::.::::::::..::.::::::::::.::::::::::::::::
CCDS43 DGELVFRHAQDLILEIIYTEPVDLSLGTLGEISGHQLMSLSTADAKKDPSCKTCNISVGR
              280       290       300       310       320       330




376 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:03:08 2016 done: Wed Nov  2 22:03:09 2016
 Total Scan time:  2.340 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]