Result of FASTA (ccds) for
pF1KA1793
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1793, 1154 aa
1>>>pF1KA1793 1154 - 1154 aa - 1154 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.1464+/-0.00138; mu= -5.8144+/- 0.083
mean_var=508.3972+/-107.692, 0's: 0 Z-trim(112.0): 147 B-trim: 221 in 1/52
Lambda= 0.056882
statistics sampled from 12709 (12820) to 12709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.394), width: 16
Scan time: 3.900
The best scores are: opt bits E(32554)
CCDS47704.1 CCDC136 gene_id:64753|Hs108|chr7 (1154) 7416 624.5 4.3e-178
CCDS56510.1 CCDC136 gene_id:64753|Hs108|chr7 ( 434) 1353 126.6 1.3e-28
>>CCDS47704.1 CCDC136 gene_id:64753|Hs108|chr7 (1154 aa)
initn: 7416 init1: 7416 opt: 7416 Z-score: 3310.9 bits: 624.5 E(32554): 4.3e-178
Smith-Waterman score: 7416; 99.9% identity (100.0% similar) in 1154 aa overlap (1-1154:1-1154)
10 20 30 40 50 60
pF1KA1 MQAMEGEVLLPALYEEEEEEEEEEEEVEEEEEQVQKGGSVGSLSVNKHRGLSLTETELEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MQAMEGEVLLPALYEEEEEEEEEEEEVEEEEEQVQKGGSVGSLSVNKHRGLSLTETELEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 LREEISLLEHEKESELKEIEQELHLAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LREEISLLEHEKESELKEIEQELHLAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 ELEDMERIRGDYEMEIASLRAEMEMKSSEPSGSLGLSDYSGLQEELQELRERYHFLNEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ELEDMERIRGDYEMEIASLRAEMEMKSSEPSGSLGLSDYSGLQEELQELRERYHFLNEEY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 RALQESNSSLTGQLADLESERTQRATERWLQSQTLSMTSAESQTSEMDFLEPDPEMQLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RALQESNSSLTGQLADLESERTQRATERWLQSQTLSMTSAESQTSEMDFLEPDPEMQLLR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 QQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQRRLQRELKCAQNEVLRFQTSHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQRRLQRELKCAQNEVLRFQTSHS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 VTQNEELKSRLCTLQKKYDTSQDEQNELLKMQLQLQTELRQLKVMKSTLVENQSEKELLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VTQNEELKSRLCTLQKKYDTSQDEQNELLKMQLQLQTELRQLKVMKSTLVENQSEKELLC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 RLQKLHLQHQNVTCEKEKLLERQQQLQEELQCHEAELQHLRDTVASFKESNEKDTETHAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RLQKLHLQHQNVTCEKEKLLERQQQLQEELQCHEAELQHLRDTVASFKESNEKDTETHAQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LQEMKQLYQASKDELERQKHMYDQLEQDLLLCQLELKELKASHPIPEDKGKCANKCDTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LQEMKQLYQASKDELERQKHMYDQLEQDLLLCQLELKELKASHPIPEDKGKCANKCDTLL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 SRLTELQEKYKASQKEMGQLQMEQCELLEDQRRMQEEQGQLQEELHRLTLPLPKSGLLLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SRLTELQEKYKASQKEMGQLQMEQCELLEDQRRMQEEQGQLQEELHRLTLPLPKSGLLLK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 SQELLTKLEDLCELQLLYQGMQEEQKKLIQNQDCVLKEQLEIHEELRRFKESHFQEVLEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SQELLTKLEDLCELQLLYQGMQEEQKKLIQNQDCVLKEQLEIHEELRRFKESHFQEVLEN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 PDDSKLAKSSKCNRNKQSKLLMEQMQALQVMYDAGQAKQELLQQEQGRLLEERKRLQADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PDDSKLAKSSKCNRNKQSKLLMEQMQALQVMYDAGQAKQELLQQEQGRLLEERKRLQADL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 QLCLEEMQLLQVQSPSIKMSLESYGKSYGSMVPSNENCRKTYDTTVDDNESYYKSYTSTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QLCLEEMQLLQVQSPSIKMSLESYGKSYGSMVPSNENCRKTYDTTVDDNESYYKSYTSTQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 TSSKSFLKSYDSSTSASEAYGKSYCTTSNSSITYKKSYGSTSSSDTCQKSFVSSCTDEEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TSSKSFLKSYDSSTSASEAYGKSYCTTSNSSITYKKSYGSTSSSDTCQKSFVSSCTDEEP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 AEPEDMERFEEMVVKVLIKLQAVQAMYQISQEEHSQLQEQMEKLLAKQKDLKEELDACER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AEPEDMERFEEMVVKVLIKLQAVQAMYQISQEEHSQLQEQMEKLLAKQKDLKEELDACER
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 EFKECMECLEKPMAPQNDKNEIKELQTKLRELQLQYQASMDEQGRLLVVQEQLEGQLQCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EFKECMECLEKPMAPQNDKNEIKELQTKLRELQLQYQASMDEQGRLLVVQEQLEGQLQCC
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 QEELRQLREKRPSVVKEARGKNANKNMNKNANGVKMKKVTKPCSDTSESDLETRKSLEVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QEELRQLREKRPSVVKEARGKNANKNMNKNANGVKMKKVTKPCSDTSESDLETRKSLEVV
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 LYYKASQRKLDGLAKEEEKKEEMEEEKKEVKEEAKEQCGDELVAEPADPEEAKSTEDQEE
::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS47 LYYKASQRKLDGLAKEEEKKEEMEEEKKQVKEEAKEQCGDELVAEPADPEEAKSTEDQEE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA1 NEEDKEEEEKEEDSEEEEDDADSSLESPEENNPLRLSESKKSSPTPNPPIFSLPLVGLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NEEDKEEEEKEEDSEEEEDDADSSLESPEENNPLRLSESKKSSPTPNPPIFSLPLVGLVV
1090 1100 1110 1120 1130 1140
1150
pF1KA1 ISALLWCWWAETSS
::::::::::::::
CCDS47 ISALLWCWWAETSS
1150
>>CCDS56510.1 CCDC136 gene_id:64753|Hs108|chr7 (434 aa)
initn: 2353 init1: 1298 opt: 1353 Z-score: 627.2 bits: 126.6 E(32554): 1.3e-28
Smith-Waterman score: 2184; 96.4% identity (96.7% similar) in 364 aa overlap (1-364:51-402)
10 20 30
pF1KA1 MQAMEGEVLLPALYEEEEEEEEEEEEVEEE
::::::::::::::::::::::::::::::
CCDS56 PTVTTLGSYEASEGCERKKGQRWGSLERRGMQAMEGEVLLPALYEEEEEEEEEEEEVEEE
30 40 50 60 70 80
40 50 60 70 80 90
pF1KA1 EEQVQKGGSVGSLSVNKHRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EEQVQKGGSVGSLSVNKHRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQ
90 100 110 120 130 140
100 110 120 130 140 150
pF1KA1 GLLEDERLASAQQAEVFTKQIQQLQGELRSLREEISLLEHEKESELKEIEQELHLAQAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GLLEDERLASAQQAEVFTKQIQQLQGELRSLREEISLLEHEKESELKEIEQELHLAQAEI
150 160 170 180 190 200
160 170 180 190 200 210
pF1KA1 QSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEMKSSEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEMKSSEP
210 220 230 240 250 260
220 230 240 250 260 270
pF1KA1 SGSLGLSDYSGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATERWL
: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 S------------EELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATERWL
270 280 290 300
280 290 300 310 320 330
pF1KA1 QSQTLSMTSAESQTSEMDFLEPDPEMQLLRQQLRDAEEQMHGMKNKCQELCCELEELQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QSQTLSMTSAESQTSEMDFLEPDPEMQLLRQQLRDAEEQMHGMKNKCQELCCELEELQHH
310 320 330 340 350 360
340 350 360 370 380 390
pF1KA1 RQVSEEEQRRLQRELKCAQNEVLRFQTSHSVTQNEELKSRLCTLQKKYDTSQDEQNELLK
:::::::::::::::::::::::::::::::::.
CCDS56 RQVSEEEQRRLQRELKCAQNEVLRFQTSHSVTQSSPTPNPPIFSLPLVGLVVISALLWCW
370 380 390 400 410 420
400 410 420 430 440 450
pF1KA1 MQLQLQTELRQLKVMKSTLVENQSEKELLCRLQKLHLQHQNVTCEKEKLLERQQQLQEEL
CCDS56 WAETSS
430
1154 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 11:22:39 2016 done: Thu Nov 3 11:22:40 2016
Total Scan time: 3.900 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]