FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1789, 467 aa
  1>>>pF1KA1789 467 - 467 aa - 467 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7728+/-0.0011; mu= 3.0497+/- 0.067
 mean_var=210.0859+/-41.473, 0's: 0 Z-trim(109.7): 36  B-trim: 0 in 0/54
 Lambda= 0.088486
 statistics sampled from 11042 (11066) to 11042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.34), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS35348.1 ZMAT1 gene_id:84460|Hs108|chrX         ( 638) 3167 417.2 2.4e-116
CCDS2000.1 KRCC1 gene_id:51315|Hs108|chr2          ( 259) 1098 152.8 3.9e-37


>>CCDS35348.1 ZMAT1 gene_id:84460|Hs108|chrX              (638 aa)
 initn: 3167 init1: 3167 opt: 3167  Z-score: 2202.2  bits: 417.2 E(32554): 2.4e-116
Smith-Waterman score: 3167; 100.0% identity (100.0% similar) in 467 aa overlap (1-467:172-638)

                                             10        20        30
pF1KA1                               MRTYVCHICSIAFTSLDMFRSHMQGSEHQI
                                     ::::::::::::::::::::::::::::::
CCDS35 GKVHAKKLKQLMEEHDQASPSGFQPEMAFSMRTYVCHICSIAFTSLDMFRSHMQGSEHQI
             150       160       170       180       190       200 

               40        50        60        70        80        90
pF1KA1 KESIVINLVKNSRKTQDSYQNECADYINVQKARGLEAKTCFRKMEESSLETRRYREVVDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KESIVINLVKNSRKTQDSYQNECADYINVQKARGLEAKTCFRKMEESSLETRRYREVVDS
             210       220       230       240       250       260 

              100       110       120       130       140       150
pF1KA1 RPRHRMFEQRLPFETFRTYAAPYNISQAMEKQLPHSKKTYDSFQDELEDYIKVQKARGLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RPRHRMFEQRLPFETFRTYAAPYNISQAMEKQLPHSKKTYDSFQDELEDYIKVQKARGLD
             270       280       290       300       310       320 

              160       170       180       190       200       210
pF1KA1 PKTCFRKMRENSVDTHGYREMVDSGPRSRMCEQRFSHEASQTYQRPYHISPVESQLPQWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PKTCFRKMRENSVDTHGYREMVDSGPRSRMCEQRFSHEASQTYQRPYHISPVESQLPQWL
             330       340       350       360       370       380 

              220       230       240       250       260       270
pF1KA1 PTHSKRTYDSFQDELEDYIKVQKARGLEPKTCFRKIGDSSVETHRNREMVDVRPRHRMLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PTHSKRTYDSFQDELEDYIKVQKARGLEPKTCFRKIGDSSVETHRNREMVDVRPRHRMLE
             390       400       410       420       430       440 

              280       290       300       310       320       330
pF1KA1 QKLPCETFQTYSGPYSISQVVENQLPHCLPAHDSKQRLDSISYCQLTRDCFPEKPVPLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QKLPCETFQTYSGPYSISQVVENQLPHCLPAHDSKQRLDSISYCQLTRDCFPEKPVPLSL
             450       460       470       480       490       500 

              340       350       360       370       380       390
pF1KA1 NQQENNSGSYSVESEVYKHLSSENNTADHQAGHKRKHQKRKRHLEEGKERPEKEQSKHKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NQQENNSGSYSVESEVYKHLSSENNTADHQAGHKRKHQKRKRHLEEGKERPEKEQSKHKR
             510       520       530       540       550       560 

              400       410       420       430       440       450
pF1KA1 KKSYEDTDLDKDKSIRQRKREEDRVKVSSGKLKHRKKKKSHDVPSEKEERKHRKEKKKSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KKSYEDTDLDKDKSIRQRKREEDRVKVSSGKLKHRKKKKSHDVPSEKEERKHRKEKKKSV
             570       580       590       600       610       620 

              460       
pF1KA1 EERTEEEMLWDESILGF
       :::::::::::::::::
CCDS35 EERTEEEMLWDESILGF
             630        

>>CCDS2000.1 KRCC1 gene_id:51315|Hs108|chr2               (259 aa)
 initn: 904 init1: 904 opt: 1098  Z-score: 780.2  bits: 152.8 E(32554): 3.9e-37
Smith-Waterman score: 1098; 65.9% identity (84.5% similar) in 258 aa overlap (213-467:3-259)

            190       200       210       220       230       240  
pF1KA1 QRFSHEASQTYQRPYHISPVESQLPQWLPTHSKRTYDSFQDELEDYIKVQKARGLEPKTC
                                     :::.::::::::::::::::::::::::::
CCDS20                             MKHSKKTYDSFQDELEDYIKVQKARGLEPKTC
                                           10        20        30  

            250       260       270       280       290       300  
pF1KA1 FRKIGDSSVETHRNREMVDVRPRHRMLEQKLPCETFQTYSGPYSISQVVENQLPHCLPAH
       :::.  . .::   .  :. :: .::..:.:: ::.:::    .: :.:::.::. ::::
CCDS20 FRKMKGDYLETCGYKGEVNSRPTYRMFDQRLPSETIQTYPRSCNIPQTVENRLPQWLPAH
             40        50        60        70        80        90  

            310       320       330       340       350       360  
pF1KA1 DSKQRLDSISYCQLTRDCFPEKPVPLSLNQQENNSGSYSVESEVYKHLSSENNTADHQAG
       ::. ::::.::::.::::: ::::::..::::   ::..:: .::::.::.:.:. :::.
CCDS20 DSRLRLDSLSYCQFTRDCFSEKPVPLNFNQQEYICGSHGVEHRVYKHFSSDNSTSTHQAS
            100       110       120       130       140       150  

            370       380       390       400       410            
pF1KA1 HKRKHQKRKRHLEEGKERPEKEQSKHKRKKSYEDTDLDKDKSIRQRKREE---DRVKVSS
       ::. ::::::: :::.:. :.:.:::::::: :. :::: ::: :::. :   . :.::.
CCDS20 HKQIHQKRKRHPEEGREKSEEERSKHKRKKSCEEIDLDKHKSI-QRKKTEVEIETVHVST
            160       170       180       190        200       210 

     420       430       440       450       460       
pF1KA1 GKLKHRKKKKSHDVPSEKEERKHRKEKKKSVEERTEEEMLWDESILGF
        :::.::.:::.:: :.:::::. :.::.. .::::::::::.:::::
CCDS20 EKLKNRKEKKSRDVVSKKEERKRTKKKKEQGQERTEEEMLWDQSILGF
             220       230       240       250         




467 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:55:21 2016 done: Sat Nov  5 06:55:21 2016
 Total Scan time:  3.020 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]