FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1788, 411 aa
  1>>>pF1KA1788 411 - 411 aa - 411 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9284+/-0.00112; mu= -4.9251+/- 0.069
 mean_var=409.5604+/-82.423, 0's: 0 Z-trim(115.8): 128  B-trim: 0 in 0/53
 Lambda= 0.063375
 statistics sampled from 16228 (16360) to 16228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.503), width:  16
 Scan time:  3.580

The best scores are:                                      opt bits E(32554)
CCDS31468.1 ALX4 gene_id:60529|Hs108|chr11         ( 411) 2817 271.2 1.3e-72
CCDS9028.1 ALX1 gene_id:8092|Hs108|chr12           ( 326)  782 85.0 1.1e-16
CCDS819.1 ALX3 gene_id:257|Hs108|chr1              ( 343)  721 79.5 5.5e-15


>>CCDS31468.1 ALX4 gene_id:60529|Hs108|chr11              (411 aa)
 initn: 2817 init1: 2817 opt: 2817  Z-score: 1417.3  bits: 271.2 E(32554): 1.3e-72
Smith-Waterman score: 2817; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)

               10        20        30        40        50        60
pF1KA1 MNAETCVSYCESPAAAMDAYYSPVSQSREGSSPFRAFPGGDKFGTTFLSAAAKAQGFGDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MNAETCVSYCESPAAAMDAYYSPVSQSREGSSPFRAFPGGDKFGTTFLSAAAKAQGFGDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 KSRARYGAGQQDLATPLESGAGARGSFNKFQPQPSTPQPQPPPQPQPQQQQPQPQPPAQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KSRARYGAGQQDLATPLESGAGARGSFNKFQPQPSTPQPQPPPQPQPQQQQPQPQPPAQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 HLYLQRGACKTPPDGSLKLQEGSSGHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HLYLQRGACKTPPDGSLKLQEGSSGHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SVKEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SVKEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 VYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 AQIQNPSWLGNNGAASPVPACVVPCDPVPACMSPHAHPPGSGASSVTDFLSVSGAGSHVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AQIQNPSWLGNNGAASPVPACVVPCDPVPACMSPHAHPPGSGASSVTDFLSVSGAGSHVG
              310       320       330       340       350       360

              370       380       390       400       410 
pF1KA1 QTHMGSLFGAASLSPGLNGYELNGEPDRKTSSIAALRMKAKEHSAAISWAT
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QTHMGSLFGAASLSPGLNGYELNGEPDRKTSSIAALRMKAKEHSAAISWAT
              370       380       390       400       410 

>>CCDS9028.1 ALX1 gene_id:8092|Hs108|chr12                (326 aa)
 initn: 697 init1: 579 opt: 782  Z-score: 413.0  bits: 85.0 E(32554): 1.1e-16
Smith-Waterman score: 782; 52.5% identity (78.6% similar) in 238 aa overlap (175-410:96-325)

          150       160       170       180       190       200    
pF1KA1 GHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYLSVKEAGVKGPQDRASSDLPSPLEK
                                     ::.   :.. . ::: :..  ..:    .:
CCDS90 ERTSPCQDSSVNYGITKVEGQPLHTELNRAMDNCN-SLRMSPVKGMQEK--GELDELGDK
          70        80        90       100        110         120  

          210       220       230       240       250       260    
pF1KA1 ADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN
        ::. ...::::.:::::: ::::::::::::::::::.:::::.::.::::::::::::
CCDS90 CDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQN
            130       140       150       160       170       180  

          270       280       290       300       310       320    
pF1KA1 RRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVP
       ::::::::::.::.::...::...:.. .: :...: ::::  : :: ...: : .:..:
CCDS90 RRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVVTSCMLP
            190       200       210       220       230       240  

          330       340       350       360       370       380    
pF1KA1 CDPVPACMSPHAHPPGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAASLSPGLNGYELNG
        : . .::.:..: : .  :: : : . ..  :::    ....:  . :. . ::. .. 
CCDS90 RD-TSSCMTPYSHSPRTD-SSYTGFSNHQNQFSHVP---LNNFFTDSLLTGATNGHAFET
             250        260       270          280       290       

            390       400       410 
pF1KA1 EPD--RKTSSIAALRMKAKEHSAAISWAT
       .:.  :..::::.::::::::.: :::: 
CCDS90 KPEFERRSSSIAVLRMKAKEHTANISWAM
       300       310       320      

>>CCDS819.1 ALX3 gene_id:257|Hs108|chr1                   (343 aa)
 initn: 681 init1: 583 opt: 721  Z-score: 382.5  bits: 79.5 E(32554): 5.5e-15
Smith-Waterman score: 731; 41.1% identity (63.1% similar) in 360 aa overlap (76-411:8-343)

          50        60        70        80        90       100     
pF1KA1 TFLSAAAKAQGFGDAKSRARYGAGQQDLATPLESGAGARGSFNKFQPQPSTPQPQPPPQP
                                     :.. :  : : .     .:  : ::  :  
CCDS81                        MDPEHCAPFRVGP-APGPYVASGDEP--PGPQGTPAA
                                      10         20          30    

         110       120                 130        140          150 
pF1KA1 QPQQQQPQPQPPAQPHLYLQRGAC----------KTPPDGSLK-LQEG---SSGHSAALQ
        :. .   : ::  :.:  .  ::            ::   :. :  :   ..::    .
CCDS81 APHLH---PAPPRGPRL-TRFPACGPLEPYLPEPAKPPAKYLQDLGPGPALNGGH--FYE
              40         50        60        70        80          

             160          170        180       190        200      
pF1KA1 VPCYAKESS---LGEPELPPDSDTVGMDS-SYLSVKEAGVKGPQDRASSDLP-SPL--EK
        :  :.:..    . :.:: :      :. : :.    :  ::   ::  :: ::   ..
CCDS81 GPAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQ----GSPGPC-LASLHLPLSPGLPDS
       90       100       110       120            130       140   

          210       220       230       240       250       260    
pF1KA1 ADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN
        .  .::.:::::::::...::::::::::::::::::::::::.:::::::::::::::
CCDS81 MELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQN
           150       160       170       180       190       200   

          270       280       290       300       310       320    
pF1KA1 RRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVP
       ::::::::::.:..:. :. :..::.. .: :.... :.::  : .. :..::   :.: 
CCDS81 RRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLW-ASPGSGSPGGPCLVS
           210       220       230       240        250       260  

          330        340       350       360       370         380 
pF1KA1 CDPVPA-CMSPHAHPPGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAASLSPGLNG--YE
        . .:. ::::..:: ::    :. :..: . ..    .: : ...  .. : :.:  .:
CCDS81 PEGIPSPCMSPYSHPHGS----VAGFMGVPAPSA----AHPG-IYSIHGFPPTLGGHSFE
            270       280           290            300       310   

             390       400       410 
pF1KA1 LNGEPDRKTSSIAALRMKAKEHSAAISWAT
        ... : :. :...::.: ::  . ..:.:
CCDS81 PSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
           320       330       340   




411 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:21:54 2016 done: Thu Nov  3 11:21:55 2016
 Total Scan time:  3.580 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]