FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1649, 421 aa
  1>>>pF1KA1649 421 - 421 aa - 421 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4537+/-0.000861; mu= 12.7701+/- 0.052
 mean_var=98.7785+/-19.850, 0's: 0 Z-trim(109.2): 20  B-trim: 0 in 0/50
 Lambda= 0.129046
 statistics sampled from 10741 (10751) to 10741 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.33), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS14038.1 POLDIP3 gene_id:84271|Hs108|chr22      ( 421) 2719 516.4  2e-146
CCDS74873.1 POLDIP3 gene_id:84271|Hs108|chr22      ( 438) 1872 358.8 6.1e-99
CCDS14039.1 POLDIP3 gene_id:84271|Hs108|chr22      ( 392) 1633 314.2 1.4e-85


>>CCDS14038.1 POLDIP3 gene_id:84271|Hs108|chr22           (421 aa)
 initn: 2719 init1: 2719 opt: 2719  Z-score: 2742.3  bits: 516.4 E(32554): 2e-146
Smith-Waterman score: 2719; 100.0% identity (100.0% similar) in 421 aa overlap (1-421:1-421)

               10        20        30        40        50        60
pF1KA1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 ISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKAMAPLHPHPAGMRINVVNNHQAKQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKAMAPLHPHPAGMRINVVNNHQAKQN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK
              370       380       390       400       410       420

        
pF1KA1 L
       :
CCDS14 L
        

>>CCDS74873.1 POLDIP3 gene_id:84271|Hs108|chr22           (438 aa)
 initn: 1786 init1: 1786 opt: 1872  Z-score: 1889.8  bits: 358.8 E(32554): 6.1e-99
Smith-Waterman score: 2675; 96.1% identity (96.1% similar) in 438 aa overlap (1-421:1-438)

               10        20        30        40        50        60
pF1KA1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK
               70        80        90       100       110       120

              130       140       150                        160   
pF1KA1 ISLKRSSPAAFINPPIGTVTPALKLTKTIQ-----------------VPQQKAMAPLHPH
       ::::::::::::::::::::::::::::::                 :::::::::::::
CCDS74 ISLKRSSPAAFINPPIGTVTPALKLTKTIQRMHVDPVGWILTTECFQVPQQKAMAPLHPH
              130       140       150       160       170       180

           170       180       190       200       210       220   
pF1KA1 PAGMRINVVNNHQAKQNLYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PAGMRINVVNNHQAKQNLYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSK
              190       200       210       220       230       240

           230       240       250       260       270       280   
pF1KA1 ALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMT
              250       260       270       280       290       300

           290       300       310       320       330       340   
pF1KA1 VNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQP
              310       320       330       340       350       360

           350       360       370       380       390       400   
pF1KA1 MKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALF
              370       380       390       400       410       420

           410       420 
pF1KA1 KSSGASVTTQPTEFKIKL
       ::::::::::::::::::
CCDS74 KSSGASVTTQPTEFKIKL
              430        

>>CCDS14039.1 POLDIP3 gene_id:84271|Hs108|chr22           (392 aa)
 initn: 1576 init1: 1576 opt: 1633  Z-score: 1650.1  bits: 314.2 E(32554): 1.4e-85
Smith-Waterman score: 2446; 93.1% identity (93.1% similar) in 421 aa overlap (1-421:1-392)

               10        20        30        40        50        60
pF1KA1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 ISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKAMAPLHPHPAGMRINVVNNHQAKQN
       ::::::::::::::::::::::::::::::                             :
CCDS14 ISLKRSSPAAFINPPIGTVTPALKLTKTIQ-----------------------------N
              130       140       150                              

              190       200       210       220       230       240
pF1KA1 LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA
             160       170       180       190       200       210 

              250       260       270       280       290       300
pF1KA1 LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF
             220       230       240       250       260       270 

              310       320       330       340       350       360
pF1KA1 CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP
             280       290       300       310       320       330 

              370       380       390       400       410       420
pF1KA1 ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK
             340       350       360       370       380       390 

        
pF1KA1 L
       :
CCDS14 L
        




421 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:37:24 2016 done: Wed Nov  2 21:37:24 2016
 Total Scan time:  2.280 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]