Result of FASTA (ccds) for
pF1KA1633
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1633, 1814 aa
1>>>pF1KA1633 1814 - 1814 aa - 1814 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.3825+/-0.00153; mu= -3.6419+/- 0.090
mean_var=374.1838+/-78.909, 0's: 0 Z-trim(107.7): 126 B-trim: 99 in 1/52
Lambda= 0.066303
statistics sampled from 9632 (9731) to 9632 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.299), width: 16
Scan time: 6.770
The best scores are: opt bits E(32554)
CCDS43871.1 CDK5RAP2 gene_id:55755|Hs108|chr9 (1814) 11608 1126.8 0
CCDS6823.1 CDK5RAP2 gene_id:55755|Hs108|chr9 (1893) 10032 976.0 0
CCDS75888.1 CDK5RAP2 gene_id:55755|Hs108|chr9 (1663) 4140 412.4 7.1e-114
>>CCDS43871.1 CDK5RAP2 gene_id:55755|Hs108|chr9 (1814 aa)
initn: 11608 init1: 11608 opt: 11608 Z-score: 6018.0 bits: 1126.8 E(32554): 0
Smith-Waterman score: 11608; 99.9% identity (100.0% similar) in 1814 aa overlap (1-1814:1-1814)
10 20 30 40 50 60
pF1KA1 MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFQERIQALEEDLR
::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS43 KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFEERIQALEEDLR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 YQNLRKTLEEQISEIRRREEESFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YQNLRKTLEEQISEIRRREEESFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTELLASKEDEDTIKIGEDDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTELLASKEDEDTIKIGEDDE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 INFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAHAPGCLEEGAFINLLAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 INFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAHAPGCLEEGAFINLLAPL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 FNEKATLLLESRPDLLKVVRELLLGQLFLTEQEVSGEHLDGKTEKTPKQKGELVHFVQTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FNEKATLLLESRPDLLKVVRELLLGQLFLTEQEVSGEHLDGKTEKTPKQKGELVHFVQTN
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 SFSKPHDELKLSCEAQLVKAGEVPKVGLKDASVQTVATEGDLLRFKHEATREAWEEKPIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SFSKPHDELKLSCEAQLVKAGEVPKVGLKDASVQTVATEGDLLRFKHEATREAWEEKPIN
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 TALSAEHRPENLHGVPGWQAALLSLPGITNREAKKSRLPILIKPSRSLGNMYRLPATQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TALSAEHRPENLHGVPGWQAALLSLPGITNREAKKSRLPILIKPSRSLGNMYRLPATQEV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA1 YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA1 EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA1 NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA1 KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA1 SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA1 EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA1 GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA1 VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEELKLRQQLLSQNDKLLQSLRVE
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS43 VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEEVKLRQQLLSQNDKLLQSLRVE
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA1 LKAYEKLDEEHRRLRDGDKYPMESDNSFDLFDSSQAVTPKSVSETPPLSGNDTDSLSCDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LKAYEKLDEEHRRLRDGDKYPMESDNSFDLFDSSQAVTPKSVSETPPLSGNDTDSLSCDS
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA1 GSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQISQGQRLLAEMDIQTQEAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQISQGQRLLAEMDIQTQEAP
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA1 SSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLLWRVSLPEDGQCPLHCEQIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLLWRVSLPEDGQCPLHCEQIG
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KA1 EMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQLVVTHKILRKARGNLELRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQLVVTHKILRKARGNLELRPG
1750 1760 1770 1780 1790 1800
1810
pF1KA1 GAHPGTCSPSRPGS
::::::::::::::
CCDS43 GAHPGTCSPSRPGS
1810
>>CCDS6823.1 CDK5RAP2 gene_id:55755|Hs108|chr9 (1893 aa)
initn: 10031 init1: 10031 opt: 10032 Z-score: 5203.0 bits: 976.0 E(32554): 0
Smith-Waterman score: 11122; 95.6% identity (95.7% similar) in 1846 aa overlap (1-1767:1-1846)
10 20 30 40 50 60
pF1KA1 MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFQERIQALEEDLR
::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS68 KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFEERIQALEEDLR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 YQNLRKTLEEQISEIRRREEESFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 YQNLRKTLEEQISEIRRREEESFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTELLASKEDEDTIKIGEDDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTELLASKEDEDTIKIGEDDE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 INFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAHAPGCLEEGAFINLLAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 INFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAHAPGCLEEGAFINLLAPL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 FNEKATLLLESRPDLLKVVRELLLGQLFLTEQEVSGEHLDGKTEKTPKQKGELVHFVQTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 FNEKATLLLESRPDLLKVVRELLLGQLFLTEQEVSGEHLDGKTEKTPKQKGELVHFVQTN
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 SFSKPHDELKLSCEAQLVKAGEVPKVGLKDASVQTVATEGDLLRFKHEATREAWEEKPIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SFSKPHDELKLSCEAQLVKAGEVPKVGLKDASVQTVATEGDLLRFKHEATREAWEEKPIN
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 TALSAEHRPENLHGVPGWQAALLSLPGITNREAKKSRLPILIKPSRSLGNMYRLPATQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 TALSAEHRPENLHGVPGWQAALLSLPGITNREAKKSRLPILIKPSRSLGNMYRLPATQEV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA1 YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA1 EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA1 NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA1 KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA1 SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA1 EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA1 GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA1 VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEELKLRQQLLSQNDKLLQSLRVE
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS68 VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEEVKLRQQLLSQNDKLLQSLRVE
1510 1520 1530 1540 1550 1560
1570
pF1KA1 LKAYEKLDEEHRRLR---------------------------------------------
:::::::::::::::
CCDS68 LKAYEKLDEEHRRLREASGEGWKGQDPFRDLHSLLMEIQALRLQLERSIETSSTLQSRLK
1570 1580 1590 1600 1610 1620
1580 1590 1600
pF1KA1 ----------------------------------DGDKYPMESDNSFDLFDSSQAVTPKS
::::::::::::::::::::::::::
CCDS68 EQLARGAEKAQEGALTLAVQAVSIPEVPLQPDKHDGDKYPMESDNSFDLFDSSQAVTPKS
1630 1640 1650 1660 1670 1680
1610 1620 1630 1640 1650 1660
pF1KA1 VSETPPLSGNDTDSLSCDSGSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VSETPPLSGNDTDSLSCDSGSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQ
1690 1700 1710 1720 1730 1740
1670 1680 1690 1700 1710 1720
pF1KA1 ISQGQRLLAEMDIQTQEAPSSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ISQGQRLLAEMDIQTQEAPSSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLL
1750 1760 1770 1780 1790 1800
1730 1740 1750 1760 1770 1780
pF1KA1 WRVSLPEDGQCPLHCEQIGEMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 WRVSLPEDGQCPLHCEQIGEMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQL
1810 1820 1830 1840 1850 1860
1790 1800 1810
pF1KA1 VVTHKILRKARGNLELRPGGAHPGTCSPSRPGS
CCDS68 VVTHKILRKARGNLELRPGGAHPGTCSPSRPGS
1870 1880 1890
>>CCDS75888.1 CDK5RAP2 gene_id:55755|Hs108|chr9 (1663 aa)
initn: 7977 init1: 4139 opt: 4140 Z-score: 2157.9 bits: 412.4 E(32554): 7.1e-114
Smith-Waterman score: 9131; 83.2% identity (83.3% similar) in 1846 aa overlap (1-1767:1-1616)
10 20 30 40 50 60
pF1KA1 MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFQERIQALEEDLR
::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS75 KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFEERIQALEEDLR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 YQNLRKTLEEQISEIRRREEESFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS75 YQNLRKTLEEQISEIRRREE-SFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
610 620 630 640 650
670 680 690 700 710 720
pF1KA1 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTELLASKEDEDTIKIGEDDE
::::::::::::::::::::::::::::::::::::::::::
CCDS75 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTE------------------
660 670 680 690 700
730 740 750 760 770 780
pF1KA1 INFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAHAPGCLEEGAFINLLAPL
CCDS75 ------------------------------------------------------------
790 800 810 820 830 840
pF1KA1 FNEKATLLLESRPDLLKVVRELLLGQLFLTEQEVSGEHLDGKTEKTPKQKGELVHFVQTN
CCDS75 ------------------------------------------------------------
850 860 870 880 890 900
pF1KA1 SFSKPHDELKLSCEAQLVKAGEVPKVGLKDASVQTVATEGDLLRFKHEATREAWEEKPIN
CCDS75 ------------------------------------------------------------
910 920 930 940 950 960
pF1KA1 TALSAEHRPENLHGVPGWQAALLSLPGITNREAKKSRLPILIKPSRSLGNMYRLPATQEV
:::::::::::::::::::::::::::::
CCDS75 -------------------------------EAKKSRLPILIKPSRSLGNMYRLPATQEV
710 720 730
970 980 990 1000 1010 1020
pF1KA1 VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
740 750 760 770 780 790
1030 1040 1050 1060 1070 1080
pF1KA1 PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
800 810 820 830 840 850
1090 1100 1110 1120 1130 1140
pF1KA1 YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
860 870 880 890 900 910
1150 1160 1170 1180 1190 1200
pF1KA1 EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
920 930 940 950 960 970
1210 1220 1230 1240 1250 1260
pF1KA1 NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
980 990 1000 1010 1020 1030
1270 1280 1290 1300 1310 1320
pF1KA1 KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
1040 1050 1060 1070 1080 1090
1330 1340 1350 1360 1370 1380
pF1KA1 SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
1100 1110 1120 1130 1140 1150
1390 1400 1410 1420 1430 1440
pF1KA1 EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
1160 1170 1180 1190 1200 1210
1450 1460 1470 1480 1490 1500
pF1KA1 GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
1220 1230 1240 1250 1260 1270
1510 1520 1530 1540 1550 1560
pF1KA1 VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEELKLRQQLLSQNDKLLQSLRVE
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS75 VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEEVKLRQQLLSQNDKLLQSLRVE
1280 1290 1300 1310 1320 1330
1570
pF1KA1 LKAYEKLDEEHRRLR---------------------------------------------
:::::::::::::::
CCDS75 LKAYEKLDEEHRRLREASGEGWKGQDPFRDLHSLLMEIQALRLQLERSIETSSTLQSRLK
1340 1350 1360 1370 1380 1390
1580 1590 1600
pF1KA1 ----------------------------------DGDKYPMESDNSFDLFDSSQAVTPKS
::::::::::::::::::::::::::
CCDS75 EQLARGAEKAQEGALTLAVQAVSIPEVPLQPDKHDGDKYPMESDNSFDLFDSSQAVTPKS
1400 1410 1420 1430 1440 1450
1610 1620 1630 1640 1650 1660
pF1KA1 VSETPPLSGNDTDSLSCDSGSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VSETPPLSGNDTDSLSCDSGSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQ
1460 1470 1480 1490 1500 1510
1670 1680 1690 1700 1710 1720
pF1KA1 ISQGQRLLAEMDIQTQEAPSSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ISQGQRLLAEMDIQTQEAPSSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLL
1520 1530 1540 1550 1560 1570
1730 1740 1750 1760 1770 1780
pF1KA1 WRVSLPEDGQCPLHCEQIGEMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WRVSLPEDGQCPLHCEQIGEMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQL
1580 1590 1600 1610 1620 1630
1790 1800 1810
pF1KA1 VVTHKILRKARGNLELRPGGAHPGTCSPSRPGS
CCDS75 VVTHKILRKARGNLELRPGGAHPGTCSPSRPGS
1640 1650 1660
1814 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:22:47 2016 done: Sat Nov 5 02:22:48 2016
Total Scan time: 6.770 Total Display time: 0.330
Function used was FASTA [36.3.4 Apr, 2011]