Result of FASTA (ccds) for
pF1KA1624
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1624, 600 aa
1>>>pF1KA1624 600 - 600 aa - 600 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5746+/-0.000961; mu= 17.1672+/- 0.057
mean_var=68.2575+/-13.728, 0's: 0 Z-trim(104.9): 35 B-trim: 94 in 1/49
Lambda= 0.155238
statistics sampled from 8109 (8125) to 8109 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.25), width: 16
Scan time: 1.970
The best scores are: opt bits E(32554)
CCDS48041.1 GPR107 gene_id:57720|Hs108|chr9 ( 600) 3922 887.8 0
CCDS48042.1 GPR107 gene_id:57720|Hs108|chr9 ( 571) 2995 680.2 1.9e-195
CCDS35162.1 GPR107 gene_id:57720|Hs108|chr9 ( 552) 2861 650.2 2e-186
CCDS42479.1 GPR108 gene_id:56927|Hs108|chr19 ( 543) 1228 284.5 2.5e-76
>>CCDS48041.1 GPR107 gene_id:57720|Hs108|chr9 (600 aa)
initn: 3922 init1: 3922 opt: 3922 Z-score: 4744.0 bits: 887.8 E(32554): 0
Smith-Waterman score: 3922; 99.7% identity (100.0% similar) in 600 aa overlap (1-600:1-600)
10 20 30 40 50 60
pF1KA1 MAALAPVGSPASRGPRLAAGLRLLPMLGLLQLLAEPGLGRVHHLALKDDVRHKVHLNTFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MAALAPVGSPASRGPRLAAGLRLLPMLGLLQLLAEPGLGRVHHLALKDDVRHKVHLNTFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 FFKDGYMVVNVSSLSLNEPEDKDVTIGFSLDRTKNDGFSSYLDEDVNYCILKKQSVSVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 FFKDGYMVVNVSSLSLNEPEDKDVTIGFSLDRTKNDGFSSYLDEDVNYCILKKQSVSVTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 LILDISRSEVRVKSPPEAGTQLPKIIFSRDEKVLGQSQEPNVNPASAGNQTQKTQDGGKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LILDISRSEVRVKSPPEAGTQLPKIIFSRDEKVLGQSQEPNVNPASAGNQTQKTQDGGKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 KRSTVDSKAMGEKSFSVHNNGGAVSFQFFFNISTDDQEGLYSLYFHKCLGKELPSDKFTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KRSTVDSKAMGEKSFSVHNNGGAVSFQFFFNISTDDQEGLYSLYFHKCLGKELPSDKFTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 SLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 LPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 ILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 WSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIESRHFARADLELLASSCPPASVSQRA
::::::::::::::::::::::::::::::::::::.:::.:::::::::::::::::::
CCDS48 WSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIESHHFAQADLELLASSCPPASVSQRA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 GITAAINLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQWKWLYQLLDETATLVFFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GITAAINLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQWKWLYQLLDETATLVFFV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 LTGYKFRPASDNPYLQLSQEEEDLEMESVVTTSGVMESMKKVKKVTNGSVEPQGEWEGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LTGYKFRPASDNPYLQLSQEEEDLEMESVVTTSGVMESMKKVKKVTNGSVEPQGEWEGAV
550 560 570 580 590 600
>>CCDS48042.1 GPR107 gene_id:57720|Hs108|chr9 (571 aa)
initn: 2995 init1: 2995 opt: 2995 Z-score: 3622.3 bits: 680.2 E(32554): 1.9e-195
Smith-Waterman score: 3680; 95.2% identity (95.2% similar) in 600 aa overlap (1-600:1-571)
10 20 30 40 50 60
pF1KA1 MAALAPVGSPASRGPRLAAGLRLLPMLGLLQLLAEPGLGRVHHLALKDDVRHKVHLNTFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MAALAPVGSPASRGPRLAAGLRLLPMLGLLQLLAEPGLGRVHHLALKDDVRHKVHLNTFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 FFKDGYMVVNVSSLSLNEPEDKDVTIGFSLDRTKNDGFSSYLDEDVNYCILKKQSVSVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 FFKDGYMVVNVSSLSLNEPEDKDVTIGFSLDRTKNDGFSSYLDEDVNYCILKKQSVSVTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 LILDISRSEVRVKSPPEAGTQLPKIIFSRDEKVLGQSQEPNVNPASAGNQTQKTQDGGKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LILDISRSEVRVKSPPEAGTQLPKIIFSRDEKVLGQSQEPNVNPASAGNQTQKTQDGGKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 KRSTVDSKAMGEKSFSVHNNGGAVSFQFFFNISTDDQEGLYSLYFHKCLGKELPSDKFTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KRSTVDSKAMGEKSFSVHNNGGAVSFQFFFNISTDDQEGLYSLYFHKCLGKELPSDKFTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 SLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 LPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 ILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 WSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIESRHFARADLELLASSCPPASVSQRA
::::::::::::::::::::::::::::::::::
CCDS48 WSIRHLQEASATDGKGDSMGPLQQRANLRAGSRI--------------------------
430 440 450
490 500 510 520 530 540
pF1KA1 GITAAINLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQWKWLYQLLDETATLVFFV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ---AAINLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQWKWLYQLLDETATLVFFV
460 470 480 490 500 510
550 560 570 580 590 600
pF1KA1 LTGYKFRPASDNPYLQLSQEEEDLEMESVVTTSGVMESMKKVKKVTNGSVEPQGEWEGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LTGYKFRPASDNPYLQLSQEEEDLEMESVVTTSGVMESMKKVKKVTNGSVEPQGEWEGAV
520 530 540 550 560 570
>>CCDS35162.1 GPR107 gene_id:57720|Hs108|chr9 (552 aa)
initn: 3608 init1: 2861 opt: 2861 Z-score: 3460.4 bits: 650.2 E(32554): 2e-186
Smith-Waterman score: 3516; 92.0% identity (92.0% similar) in 600 aa overlap (1-600:1-552)
10 20 30 40 50 60
pF1KA1 MAALAPVGSPASRGPRLAAGLRLLPMLGLLQLLAEPGLGRVHHLALKDDVRHKVHLNTFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAALAPVGSPASRGPRLAAGLRLLPMLGLLQLLAEPGLGRVHHLALKDDVRHKVHLNTFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 FFKDGYMVVNVSSLSLNEPEDKDVTIGFSLDRTKNDGFSSYLDEDVNYCILKKQSVSVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FFKDGYMVVNVSSLSLNEPEDKDVTIGFSLDRTKNDGFSSYLDEDVNYCILKKQSVSVTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 LILDISRSEVRVKSPPEAGTQLPKIIFSRDEKVLGQSQEPNVNPASAGNQTQKTQDGGKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LILDISRSEVRVKSPPEAGTQLPKIIFSRDEKVLGQSQEPNVNPASAGNQTQKTQDGGKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 KRSTVDSKAMGEKSFSVHNNGGAVSFQFFFNISTDDQEGLYSLYFHKCLGKELPSDKFTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KRSTVDSKAMGEKSFSVHNNGGAVSFQFFFNISTDDQEGLYSLYFHKCLGKELPSDKFTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 SLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 LPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 ILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 WSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIESRHFARADLELLASSCPPASVSQRA
:::::::::::::::
CCDS35 WSIRHLQEASATDGK---------------------------------------------
430
490 500 510 520 530 540
pF1KA1 GITAAINLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQWKWLYQLLDETATLVFFV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ---AAINLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQWKWLYQLLDETATLVFFV
440 450 460 470 480 490
550 560 570 580 590 600
pF1KA1 LTGYKFRPASDNPYLQLSQEEEDLEMESVVTTSGVMESMKKVKKVTNGSVEPQGEWEGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LTGYKFRPASDNPYLQLSQEEEDLEMESVVTTSGVMESMKKVKKVTNGSVEPQGEWEGAV
500 510 520 530 540 550
>>CCDS42479.1 GPR108 gene_id:56927|Hs108|chr19 (543 aa)
initn: 1664 init1: 953 opt: 1228 Z-score: 1483.9 bits: 284.5 E(32554): 2.5e-76
Smith-Waterman score: 1623; 47.9% identity (70.4% similar) in 595 aa overlap (8-588:12-539)
10 20 30 40 50
pF1KA1 MAALAPVGSPASRGPRLAAGLRLLPMLGLLQLLAEPGLGRVHHLALKDDVRHKVHL
:::: : :: :: :: ::.:.::: . : ..:
CCDS42 MAVSERRGLGRGSPAEWGQRL-----------LLVLLLGGCSGRIHQLALTGEKRADIQL
10 20 30 40
60 70 80 90 100 110
pF1KA1 NTFGFFKDGYMVVNVS--SLSLNEPEDKDVTIGFSLDRTKNDGFSSYLDEDVNYCILKKQ
:.:::. .: . :..: :.: : :.:.. .::::.:... :: .: . : :.:.
CCDS42 NSFGFYTNGSLEVELSVLRLGLREAEEKSLLVGFSLSRVRSGRVRSYSTRDFQDCPLQKN
50 60 70 80 90 100
120 130 140 150 160 170
pF1KA1 SVSVTLLILDISRSEVRVKSPPEAGTQLPKIIFSRDEKVLGQS-QEPNVNPASAGNQTQK
: : .:.: :. ....:. . : : .:: .: .. ..:.. : .. .:
CCDS42 SSSFLVLFL-INTKDLQVQVR-KYGEQKTLFIFP---GLLPEAPSKPGL-PKPQATVPRK
110 120 130 140 150 160
180 190 200 210 220
pF1KA1 TQDGG-------KSKRSTVDSKAMGEKSFSV---HNNGGAVSFQFFFNISTDDQEGLYSL
.. :: :: ..... . .:.. . : :. . .:.: :... .:: :::
CCDS42 VDGGGTSAASKPKSTPAVIQGPSGKDKDLVLGLSHLNN-SYNFSFHVVIGSQAEEGQYSL
170 180 190 200 210 220
230 240 250 260 270 280
pF1KA1 YFHKCLGKELPSDKFTFSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHI
::.: .. .:. . :.. . : :::::..:::.:.:: :::. :. :. .: .:. :
CCDS42 NFHNC-NNSVPGKEHPFDITVMIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSI
230 240 250 260 270 280
290 300 310 320 330 340
pF1KA1 LRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGAL
: . .::::::::::: ::::.::.::.:.:..:.::: :::: ::.:::.:::::::
CCDS42 LCRNTYSVFKIHWLMAALAFTKSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGAL
290 300 310 320 330 340
350 360 370 380 390 400
pF1KA1 LFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDS
:::::::::.::::::..::::.::.: ::::.::::::::::::: :::...: :::.
CCDS42 LFITIALIGSGWAFIKYVLSDKEKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEI
350 360 370 380 390 400
410 420 430 440 450 460
pF1KA1 LFLVDLLCCGAILFPVVWSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIESRHFARAD
::::::.:::::::::::::::::.::.::::
CCDS42 LFLVDLICCGAILFPVVWSIRHLQDASGTDGK----------------------------
410 420 430
470 480 490 500 510 520
pF1KA1 LELLASSCPPASVSQRAGITAAINLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQW
.:.:::::::::::::...::.:::::::.::..::::::
CCDS42 --------------------VAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQW
440 450 460 470
530 540 550 560 570 580
pF1KA1 KWLYQLLDETATLVFFVLTGYKFRPASDNPYLQLSQE-EEDLEMESVVTTSGVMESMKKV
.:::::: : .::.:::::::::.:...:::::: :: :::..::.:.: :: :...::
CCDS42 QWLYQLLVEGSTLAFFVLTGYKFQPTGNNPYLQLPQEDEEDVQMEQVMTDSGFREGLSKV
480 490 500 510 520 530
590 600
pF1KA1 KKVTNGSVEPQGEWEGAV
.:...:
CCDS42 NKTASGRELL
540
600 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 21:34:49 2016 done: Wed Nov 2 21:34:49 2016
Total Scan time: 1.970 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]