FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1604, 908 aa
  1>>>pF1KA1604 908 - 908 aa - 908 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.2222+/-0.0011; mu= 0.2448+/- 0.067
 mean_var=278.7777+/-55.502, 0's: 0 Z-trim(111.1): 49  B-trim: 0 in 0/56
 Lambda= 0.076815
 statistics sampled from 12109 (12132) to 12109 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.373), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS46465.1 CWC22 gene_id:57703|Hs108|chr2         ( 908) 5943 672.8  8e-193


>>CCDS46465.1 CWC22 gene_id:57703|Hs108|chr2              (908 aa)
 initn: 5943 init1: 5943 opt: 5943  Z-score: 3575.2  bits: 672.8 E(32554): 8e-193
Smith-Waterman score: 5943; 100.0% identity (100.0% similar) in 908 aa overlap (1-908:1-908)

               10        20        30        40        50        60
pF1KA1 MKSSVAQIKPSSGHDRRENLNSYQRNSSPEDRYEEQERSPRDRDYFDYSRSDYEHSRRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MKSSVAQIKPSSGHDRRENLNSYQRNSSPEDRYEEQERSPRDRDYFDYSRSDYEHSRRGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 SYDSSMESRNRDREKRRERERDTDRKRSRKSPSPGRRNPETSVTQSSSAQDEPATKKKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SYDSSMESRNRDREKRRERERDTDRKRSRKSPSPGRRNPETSVTQSSSAQDEPATKKKKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 ELDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ELDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 IIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 FRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKEC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 GLKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPIILEGLDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GLKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPIILEGLDLV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 EEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDAG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 SSEEDEEEEEEEGEEDEEGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SSEEDEEEEEEEGEEDEEGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKME
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 FPESQTKELCNMILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FPESQTKELCNMILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 TNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 ARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 VEQNKSSPSSSSSASSSSESDSSDSDSDSSDSSSESSSEESDSSSISSHSSASANDVRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VEQNKSSPSSSSSASSSSESDSSDSDSDSSDSSSESSSEESDSSSISSHSSASANDVRKK
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 GHGKTRSKEVDKLIRNQQTNDRKQKERRQEHGHQETRTERERRSEKHRDQNSSGSNWRDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GHGKTRSKEVDKLIRNQQTNDRKQKERRQEHGHQETRTERERRSEKHRDQNSSGSNWRDP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 ITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKRGERRNSFSENEKHTHRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKRGERRNSFSENEKHTHRI
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 KDSENFRRKDRSKSKEMNRKHSGSRSDEDRYQNGAERRWEKSSRYSEQSRESKKNQDRRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KDSENFRRKDRSKSKEMNRKHSGSRSDEDRYQNGAERRWEKSSRYSEQSRESKKNQDRRR
              850       860       870       880       890       900

               
pF1KA1 EKSPAKQK
       ::::::::
CCDS46 EKSPAKQK
               




908 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:32:33 2016 done: Wed Nov  2 21:32:34 2016
 Total Scan time:  2.860 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]