FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1579, 678 aa
  1>>>pF1KA1579 678 - 678 aa - 678 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0085+/-0.000964; mu= 14.6297+/- 0.059
 mean_var=174.3365+/-36.779, 0's: 0 Z-trim(111.2): 43  B-trim: 0 in 0/52
 Lambda= 0.097136
 statistics sampled from 12140 (12176) to 12140 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.374), width:  16
 Scan time:  4.270

The best scores are:                                      opt bits E(32554)
CCDS41345.1 RAVER2 gene_id:55225|Hs108|chr1        ( 678) 4504 643.8 2.4e-184
CCDS45960.1 RAVER1 gene_id:125950|Hs108|chr19      ( 756) 1353 202.3 2.2e-51


>>CCDS41345.1 RAVER2 gene_id:55225|Hs108|chr1             (678 aa)
 initn: 4504 init1: 4504 opt: 4504  Z-score: 3423.2  bits: 643.8 E(32554): 2.4e-184
Smith-Waterman score: 4504; 100.0% identity (100.0% similar) in 678 aa overlap (1-678:1-678)

               10        20        30        40        50        60
pF1KA1 MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 MQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 QMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 HSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 DYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 KVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 LCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLAQQQLMKFENIHTNNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLAQQQLMKFENIHTNNK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 PGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTTITAGMGMLPFFPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTTITAGMGMLPFFPN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 QHIAGQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSLLVGHHKQQQSQPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QHIAGQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSLLVGHHKQQQSQPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 GTEISSGAASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPASKTTLHKTGIASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GTEISSGAASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPASKTTLHKTGIASS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 ILDAISQGSESQHALEKCIAYSPPFGDYAQVSSLRNEKRGSSYLISAPEGGSVECVDQHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ILDAISQGSESQHALEKCIAYSPPFGDYAQVSSLRNEKRGSSYLISAPEGGSVECVDQHS
              610       620       630       640       650       660

              670        
pF1KA1 QGTGAYYMETYLKKKRVY
       ::::::::::::::::::
CCDS41 QGTGAYYMETYLKKKRVY
              670        

>>CCDS45960.1 RAVER1 gene_id:125950|Hs108|chr19           (756 aa)
 initn: 1519 init1: 1276 opt: 1353  Z-score: 1036.1  bits: 202.3 E(32554): 2.2e-51
Smith-Waterman score: 1448; 45.2% identity (67.0% similar) in 573 aa overlap (22-589:30-544)

                       10        20        30        40        50  
pF1KA1         MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPE
                                    :.:  : . .. .: :.. ::.     : ::
CCDS45 MPLRPGSLVPEGAGFPKMAADVSVTHRPPLSPKSGAEVEAGDA-AERRAPEEELPPLDPE
               10        20        30        40         50         

             60        70        80        90       100       110  
pF1KA1 EVAARLQRMQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLN
       :.  ::.. .:.. ::::::...:: : . :::::::.::.::::.::. : ::::::::
CCDS45 EIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLN
      60        70        80        90       100       110         

            120       130       140       150       160       170  
pF1KA1 GEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCF
       ::::. ::. :::  .: ..: :::::::::::..:.: :.:...:::::: .:..::::
CCDS45 GEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCF
     120       130       140       150       160       170         

            180       190       200       210       220       230  
pF1KA1 LVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKC
       ::::: ::.::::::.:::::: ::.:. .:::. ::  .:...: :.. :.  :.::.:
CCDS45 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRC
     180       190       200       210       220       230         

            240       250       260       270       280       290  
pF1KA1 LCIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAA
       ::.:.::  . : . : . .:.::.:.:::::  . . . ::::.:: :::.:::.:: :
CCDS45 LCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQA
     240       250       260       270       280       290         

            300       310       320       330       340       350  
pF1KA1 DGMTIKGSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAM
       ::... ::...::::::: :::: :::::::: .  .  :::::::: .:....:.  : 
CCDS45 DGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSAS
     300       310       320       330       340       350         

            360        370       380       390       400       410 
pF1KA1 LQVLLQPQLCGRAV-KPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLAQQQLMK
       ::.::.: : : :  : ..::.: ..: : .:..: :.:.:             : : .:
CCDS45 LQLLLNPLLHGSAGGKQGLLGAPPAMPLLNGPALSTALLQLA-----------LQTQGQK
     360       370       380       390       400                   

             420       430       440       450       460       470 
pF1KA1 FENIHTNNKPGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTTITAG
               :::.::. :  .::   :   . ::  ::              :      ::
CCDS45 --------KPGILGDSPLGALQP--GAQPANPLLGEL--------------P------AG
              410       420         430                            

             480       490       500          510       520        
pF1KA1 MGMLPFFPNQHIAGQAGPGHSNTQEKQPATVGMAEGN---FSGSQPYLQSFPNLAAGSLL
        :. : .: ..  :.  :         :...: : :.   .. . :  :  :  :  .: 
CCDS45 GGLPPELPPRR--GKPPP-------LLPSVLGPAGGDREALGLGPPAAQLTPPPAPVGL-
      440         450              460       470       480         

      530       540        550       560       570       580       
pF1KA1 VGHHKQQQSQPKGTEISSGA-ASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPA
             . :  .: . .::   .   .::::::::. :.  :::::: :.::.  :..  
CCDS45 ------RGSGLRGLQKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPASNLAGKE
            490       500       510       520       530       540  

       590       600       610       620       630       640       
pF1KA1 SKTTLHKTGIASSILDAISQGSESQHALEKCIAYSPPFGDYAQVSSLRNEKRGSSYLISA
       ..                                                          
CCDS45 ARGWGGAGRSRRPAEGPPTNPPAPGGGSSSSKAFQLKSRLLSPLSSARLPPEPGLSDSYS
            550       560       570       580       590       600  




678 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:39:14 2016 done: Fri Nov  4 01:39:15 2016
 Total Scan time:  4.270 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]